cluster # 4265

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Schistosoma mansoni
cluster # 4265 cluster # 4265 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4265#0 length = 292 sequences # 1

consensus_4265#1 length = 215 sequences # 2

consensusID : consensus_4265#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGTAATCATTTATTGTGTTTTGTAAATCCGCAAGAATATGTTTGTATATGAATAAGAAAATGTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGTGCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTTAAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAAGA]

[+] EMBL SMAA69309            [TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGTAATCATTTATTGTGTTTTGTAAATCCGCAAGAATATGTTTGTATATGAATAAGAAAATGTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGTGCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTTAAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAAGA]




>consensus_4265#0
TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGTAATCATT
TATTGTGTTTTGTAAATCCGCAAGAATATGTTTGTATATGAATAAGAAAATGTTTTTTTT
TAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGTGCTGAAATTT
CTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTTAAAAAAAAAA
AAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAAGA

consensusID : consensus_4265#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 215
fasta sequence

                              [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT]

[+] EMBL SMAA69322            [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT]
[+] EMBL SMAA69324            [AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATCATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAATAGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGAATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT]




>consensus_4265#1
AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATC
ATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAAT
AGATATTTTTCAATACCCCATGGCACATCACAAGTTTATGATACTTGGCTTCAGTGCTGA
ATTCTATTGAATGTTGAACAAATAGTGGGTGGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4265#0      --TGTGCAATACTTCAATGAGATGAAAATATTTATTTTTAACTTGATCGGAATGT-AATC 57
consensus_4265#1      AGTGTGCAATACTTGAATGAGATGAAAATATTTATTTTTAACTTAAACGGAATGNTAATC 60
                        ************ ***************************** * *******  ****

consensus_4265#0      ATTTATT----GTGTTTTGTAAATCCGC-AAGAATATGTTTGTATATG-AATAAGAAAAT 111
consensus_4265#1      ATTTATAAGAAGTATCCTGAAATCCNGCTAAGAATATGTTTGGATATGGAATAAGAAAAT 120
                      ******     ** *  ** **  * ** ************* ***** ***********

consensus_4265#0      -GTTTTTTTTTAATACTACTATGGCACATACTCAAGTTTATGATAACATTGGCTTCATGT 170
consensus_4265#1      AGATATTTTTCAATACC-CCATGGCACAT-CACAAGTTTATGATA--CTTGGCTTCA-GT 175
                       * * ***** *****  * ********* * *************   ********* **

consensus_4265#0      GCTGAAATTTCTATTGAAATGTTTGAAATAAAAATAATGTTTCGAAGTTTTGCTCGACTT 230
consensus_4265#1      GCTGAA--TTCTATTGAA-TGTTGAACAAATAGTGGGTGGGCT----------------- 215
                      ******  ********** ****  * * * *     **                     

consensus_4265#0      AAAAAAAAAAAAAAANNNAGATGCATCATCTTGACTTGTCACTNTAGCAATATCAGAAAA 290
consensus_4265#1      ------------------------------------------------------------
                                                                                  

consensus_4265#0      GA 292
consensus_4265#1      --