cluster # 4297

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Schistosoma mansoni
cluster # 4297 cluster # 4297 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4297#0 length = 594 sequences # 2

consensus_4297#1 length = 518 sequences # 1

consensusID : consensus_4297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [GCATGGT-TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT]

[+] EMBL CD084530             [GCATGGT TCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTGGAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT]
[+] EMBL CD084539             [GCATGGTCTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTACACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATGACCCAGATCCATAAACCGTT                                                                                              ]




>consensus_4297#0
GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTA
ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA
ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT
TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG
ATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA
TTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTT
CCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTAC
ACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATG
ACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTG
GAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT

consensusID : consensus_4297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG]

[+] EMBL CD084625             [GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTAATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATAACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTTTATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCGCTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAATTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTTCCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCCAAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAGTCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG]




>consensus_4297#1
GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTA
ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA
ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT
TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG
CTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA
TTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTT
CCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATAAATAAAAATAAATCACACCC
AAAGAGTAGGAAAGTAGCCTCACTGGTAACGTTGAATAGGAATGGCACCATGCTCTACAG
TCTGACAAATGTAAGGAACTGAATTGCATTTTAGTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4297#0      GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAAGACATGGCTCAAAATAGTTTGTA 60
consensus_4297#1      GCATGGTTCTCGTAACCAGTGGTTAGAGAATTTGAAACACATGGCTCAAAATAGTTTGTA 60
                      ************************************* **********************

consensus_4297#0      ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120
consensus_4297#1      ATACCGTAGGTGCATCTGTTCTTCATCTTCTAAAGATTCTGAGCTTCTGAATCTCTCATA 120
                      ************************************************************

consensus_4297#0      ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180
consensus_4297#1      ACCTTTTTATTTCAATAATTTTTATTTTATTGAATCGAATCTTCGATATCTAATCTTTTT 180
                      ************************************************************

consensus_4297#0      TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240
consensus_4297#1      TATCACAACATATACTGTTAATACCTCAACTATGAAATTTGCTCTAACAATATAATTTCG 240
                      ************************************************************

consensus_4297#0      ATGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300
consensus_4297#1      CTGTACTAATGGACCAAGAAACTTTAACAGACGTAGATACATACAGGGTTATACGTCGAA 300
                       ***********************************************************

consensus_4297#0      TTTAACTGACTGAGAACTAGGGTATGAGAAAACGTTCATAAATTTCATATGAAGTCTCTT 360
consensus_4297#1      TTTAACTGACTGAGAACTAGGGTATGACAAAACGCTCATAAATTTCATATGAAGTCTCTT 360
                      *************************** ****** *************************

consensus_4297#0      CCCCAAATGTAGGCACTTATATAACCACTTCAAATAAACAGAATAATAAATAAAACGTAC 420
consensus_4297#1      CCCCAAATGTAGGCACTTATATAACCACTTTAAATAAATA-AATAA-AAATAAATCACAC 418
                      ****************************** ******* * ***** ******* *  **

consensus_4297#0      ACATAGAAATTAAGCTCGATATACACTATTAAATGGAAGGTTTTTTGATTAATGAACATG 480
consensus_4297#1      CCAAAGAGTAGGAAAGTAGCCT-CACTGGTAA-------------CGTTGAATAGGAATG 464
                       ** ***     *        * ****  ***              * * ***    ***

consensus_4297#0      ACACAGATACATAAATCGTTAAACAAAAGTGATCGATGTTAACATAAACAATTCAGTTTG 540
consensus_4297#1      GCACC-ATGC-TCTACAGTCTGACAAATGTAA--GGAACTGAATTG--CATTTTAGTTGG 518
                       ***  ** * *  *  **   ***** ** *  *    * *  *   ** ** **** *

consensus_4297#0      GAAATCGAAATGAGAGAAGTTTATTAAAAGCTATCTGTGAGTATTAAGTCAGTT 594
consensus_4297#1      ------------------------------------------------------