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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence
[CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTT-ATCAATAAAAAAATATATGT]
[+] EMBL CD082725 [CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTT ATCAATAAAAAAATATATG ]
[-] EMBL CD076316 [ TATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCCCAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTTTTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTGCTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCGCTTAATCAATAAAAAAATATATGT]
consensusID : consensus_4303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTCTAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCGACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTT]
[-] EMBL CD075639 [TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTCTAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCGACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATCGTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCTCATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATGAAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAATAAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCATTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAATTGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGATAATCGCATTGATTATCACAATAAATACTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4303#0 ------------------------------------------------------------
consensus_4303#1 TTATACGGCTCGAGAAAAGTATCCAGGAGATGAAAGAGCTATTCTTCAATGTCGCTCTTC 60
consensus_4303#0 ------------------------------------------------------------
consensus_4303#1 TAGTTGACCAACAGGGTGATTTAATCGATCAAGTTGAATACAATTTGAACAAGGCATCCG 120
consensus_4303#0 -------------------CTCGAGCCAANAATTCGGCACGAGGGGAAAAAAGAAAAATC 41
consensus_4303#1 ACTGTGTTGTAAATTCAAAGCGTACCCTTTCGTCAGCCGTAATTAGAAAAAAGAAAAATC 180
* ** * * * * ***************
consensus_4303#0 GTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCT 101
consensus_4303#1 GTCGCTGCAAAATAATCTGTATTATATTGGTTGTTGTTATCGCCACATTGATCCTGATCT 240
************************************************************
consensus_4303#0 CATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATG 161
consensus_4303#1 CATTAGCTTCGGCAATCGGTTTAACACGATGATCAACAGTTTATTTAGTATATAAGGATG 300
************************************************************
consensus_4303#0 AAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAAT 221
consensus_4303#1 AAGTTCGAAAACAACGAATTTCGGTTTGCCAAATTCCATCATCGTACTCTCAATTCAAAT 360
************************************************************
consensus_4303#0 AAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCA 281
consensus_4303#1 AAGTCAACGATTAATTACAATAATAATATACATGATGCGTGTGCATACAATCATATCTCA 420
************************************************************
consensus_4303#0 TTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAAT 341
consensus_4303#1 TTTACTTCTATCTTGTTTACTGTGTACAGAAAAGATGGGAAAATGATGCGCCACACCAAT 480
************************************************************
consensus_4303#0 TGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGAT 401
consensus_4303#1 TGTTCTTTTAATTTTTACTCATTTAAGATATTTACTCTTTTGTACAAAACCAATTACGAT 540
************************************************************
consensus_4303#0 AATCGCATTGATTATCACAATAAATACTTTTATCATTATCATTTTTATTGTAGCTATCTT 461
consensus_4303#1 AATCGCATTGATTATCACAATAAATACTTTT----------------------------- 571
*******************************
consensus_4303#0 TTATAGTCAAAATTACTTCATTTTTAAACCGTACGCTACTGCTTGGCTGAAATTGTTCTG 521
consensus_4303#1 ------------------------------------------------------------
consensus_4303#0 CTTGTTGAATATATATATATATATATATATATATATATATATATATATATAATTTAGTCG 581
consensus_4303#1 ------------------------------------------------------------
consensus_4303#0 CTTATCAATAAAAAAATATATGT 604
consensus_4303#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||