cluster # 4333

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Schistosoma mansoni
cluster # 4333 cluster # 4333 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4333#0 length = 745 sequences # 2

consensus_4333#1 length = 493 sequences # 1

consensusID : consensus_4333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence

                              [AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGTAATGTTAACCTTTAGTAGGAATATAATTACAGACTACTGACTCTGTGCCAGTCTTCCTACTACATTACGCTGGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGG-ATATAAACCGAGTATGCTTGAAAT-AATGATTC]

[+] EMBL CD082123             [AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGTAATGTTAACCTTTAGTAGGAATATAATTACAGACTACTGACTCTGTGCCAGTCTTCCTACTACATTACGCTGGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGG ATATAAACCGAGTATGCTTGAAAT AATGATT ]
[-] EMBL CD075738             [                                                                                                                                                                      tanACAGTATTCCAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACAGTATTTTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGTCACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTA GGCTTGATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGGTATATAAACCGAGTATGCTTGAAATAAATGATTC]




>consensus_4333#0
AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGTAATGTTAACCTTT
AGTAGGAATATAATTACAGACTACTGACTCTGTGCCAGTCTTCCTACTACATTACGCTGG
ATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTCCA
AACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGCTG
TTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGACAC
ATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTACA
GTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAAGT
CACTAGGTGTTATATCCTAGTGATAATGAAAGTACGAGTAACTTTCGAGGCCTGTTAATG
GACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTATATC
TATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTACTG
TCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTTGAT
CTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGGATATAAA
CCGAGTATGCTTGAAATAATGATTC

consensusID : consensus_4333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 493
fasta sequence

                              [GTGAATAGGGTGAACAGTAATTAATGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAGAGGTCAGAATGAAGCTCATAATAAAAGGAACATGAATATGAATAGTTAAATTACTTAACAATTATACAATAGGAAATATACATATCATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCATAATTCTCTACGGGATATAAAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAAGCAACGAATTAAAACTAGATTAAATAAATGTATATTTTCAAATGATTAGAAAGATTTTAATCGTAATACAAAGAAAACTATTTACAGATATTGTGGTGTGGTCTACTTATATCTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATAAAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGAAGATGGAT]

[+] EMBL CD088135             [GTGAATAGGGTGAACAGTAATTAATGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAGAGGTCAGAATGAAGCTCATAATAAAAGGAACATGAATATGAATAGTTAAATTACTTAACAATTATACAATAGGAAATATACATATCATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCATAATTCTCTACGGGATATAAAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAAGCAACGAATTAAAACTAGATTAAATAAATGTATATTTTCAAATGATTAGAAAGATTTTAATCGTAATACAAAGAAAACTATTTACAGATATTGTGGTGTGGTCTACTTATATCTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATAAAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGAAGATGGAT]




>consensus_4333#1
GTGAATAGGGTGAACAGTAATTAATGGACTAGGTATAACTCAAGAATGGTAAATCGTATA
ATAATAGTCTAGAGGTCAGAATGAAGCTCATAATAAAAGGAACATGAATATGAATAGTTA
AATTACTTAACAATTATACAATAGGAAATATACATATCATATTGGTCCATAAATAGTTCT
CAAAGTTACCATTCATAATTCTCTACGGGATATAAAATAGATCATCAATTTTAAACTTTT
TTTAAACAATGAAGCAACGAATTAAAACTAGATTAAATAAATGTATATTTTCAAATGATT
AGAAAGATTTTAATCGTAATACAAAGAAAACTATTTACAGATATTGTGGTGTGGTCTACT
TATATCTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGAC
CGATAAAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATT
AGAGAAGATGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4333#0      AGGACTTAGTTCAGATTCATACTAGTTATTCTCAGATTAAATAATGT-AATGTTAACCTT 59
consensus_4333#1      ------------------------------------GTGAATAGGGTGAACAGTAATTAA 24
                                                           * ****  ** **   ***    

consensus_4333#0      TAGTAGGAATATAATTACAGACTACTGACTC-TGTGCCAGTCTTCCTACTACATTACGCT 118
consensus_4333#1      TGGACTAGGTATAACTCAAGAATGGTAAATCGTATAATAATAGTCTAG--AGGTCAGAAT 82
                      * *      ***** *  *** *  * * ** * *   * *  **     *  * *   *

consensus_4333#0      GGATATTTTCCATAGCTACTTAAGGACTTCATGCATTTTTCTGTTTCGTTAACAGTATTC 178
consensus_4333#1      GAA-GCTCATAATAAAAGGAACATGAAT--ATGAATAGTTAAATTAC-TTAACAATTATA 138
                      * *   *    ***        * ** *  *** **  **   ** * ****** *  * 

consensus_4333#0      CAAACTTATCCATGTTTATGCATTTCACTCCTCAAATCGAATGTGGAAATACTACTTAGC 238
consensus_4333#1      CAATAGGAAATATACATAT-CATATTGGTCCATAAATAGTTCTCAAAGTTACCATTCA-T 196
                      ***    *   **   *** *** *   ***  **** *       *  *** * * *  

consensus_4333#0      TGTTTCTTGTGGTCAATGTTCAGATAGATGATACTAGATAAAATCTTATCTCCCGTTGAC 298
consensus_4333#1      AATTCTCTACGGGATATA---AAATAGATCATCAATTTTAAACTTTTTTTAAACAATGAA 253
                        **   *  **   **    * ****** **      **** * ** *    *  *** 

consensus_4333#0      ACATGCTTATCGACAGGTTGATGTAATTAGCTGCCAAACCATTATCTCCTTATGTAGGTA 358
consensus_4333#1      GCA-ACGAATTAA-AACTAGAT-TAAATAAATGT-ATATTTTCAAATGATTAGAAAGATT 309
                       **  *  **  * *  * *** *** **  **  * *   * *  *  ***   ** * 

consensus_4333#0      CAGTATTCTGATAAGCAAGTAATTTTCTTGTTAATCTCCACCTAACTAGTTCTTATTGAA 418
consensus_4333#1      TTA-ATCGTAATACA-AAGAAAACTATTTACAGATATTGTGGTG--TGGTCTACTTATAT 365
                          **  * ***   *** **  *  **    ** *     *   * **     *  * 

consensus_4333#0      GTCACTAGGTGTTATATCCTAGTGATAATGAA-AGTACGAGTAACTTTCGAGGCCTGTTA 477
consensus_4333#1      CTTCATAGGTAGTATATGGTGGTGGTCAGACATAGAATGTATTTTCGCAGAAGACCGATA 425
                       *   *****  *****  * *** * *   * ** * *  *       ** * * * **

consensus_4333#0      ATGGACTATTGTTCTATATATATTCTTATTGTATAGCTATTGAGTAACTAGATTGTGTAT 537
consensus_4333#1      AAGAAAGAACTGAAATGACGCGCAATTGTTAGGAAAATGCATANACANTGAAATTAGAGA 485
                      * * *  *         *       ** **    *  *    *   * *  * *  *   

consensus_4333#0      ATCTATATTTATCTTATTATAAGCTTCATTTTGACCTATAAATTATTATTATACGAATTA 597
consensus_4333#1      AGATGGAT---------------------------------------------------- 493
                      *  *  **                                                    

consensus_4333#0      CTGTCCCTAAATTCAGTTTATTGATTATTGTCTCTCACGTTCACAGCCATATTANGGCTT 657
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      GATCTTGTACAAATATTATTTTCTATTTTATGATGTGGTACGGTCTGTATGTCTGGATAT 717
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      AAACCGAGTATGCTTGAAATAATGATTC 745
consensus_4333#1      ----------------------------