cluster # 4342

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4342 cluster # 4342 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4342#0 length = 863 sequences # 2

consensus_4342#1 length = 434 sequences # 1

consensusID : consensus_4342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 863
fasta sequence

                              [GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGG-GTGTCATGGTCTGTC-GTATGTGGNGNCGGNCCGACCAAGCTNAAATATCATCTTGATAGAGCTAAATCACGTGAAGAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACAACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACGACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACCAGTTGTAGAGGAGAAGAAATCACGT]

[+] EMBL CD160515             [GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGG GTGTCATGGTCTGTC GTATGTG                                                                                                                                                                                                                                                        ]
[-] EMBL CD118712             [                                                                                                                                                                                                                                                                                                                                                              GACGACCGATGGTGGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAANTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCNCAAGCTTTTGTTGNGAAAGGTGT TCATGGTCGGTCNGT NGTGGNGNCGGNCCGACCAAGCTNAAATATCATCTTGATAGAGCTAAATCACGTGAAGAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACAACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACGACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACCAGTTGTAGAGGAGAAGAAATCACGT]




>consensus_4342#0
GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGA
ATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTAC
GAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTG
TTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTT
ATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATC
AATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGAT
GGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGAT
AGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAG
GTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAA
TCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGGTGTCAT
GGTCTGTCGTATGTGGNGNCGGNCCGACCAAGCTNAAATATCATCTTGATAGAGCTAAAT
CACGTGAAGAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACAAC
GTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACGAC
GTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACCAG
TTGTAGAGGAGAAGAAATCACGT

consensusID : consensus_4342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGATATAATAAATATTACATAACGGAGTTTAGCTGTCATTTTCAACATCCCCCTCGGCTGTTTGGTCACTGGCCCATAACGTCAAGTTGTCTCTTAAAAGTTGCATAATTAGTGTGCTGTCTTTGTAGGAATCATCTTGAAGCTGATCTAGTTCTGCTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAATTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGTAAATTTTCGGCAGCCGTAGTAGCCTTTGTGTAAGCATCCAATGATTCTGGACCACTCTGTCCGAGATCATCAGTGGAACCTCAGCGAGATACGGTATATCGCCTTGATTTT]

[+] EMBL AI395047             [TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGATATAATAAATATTACATAACGGAGTTTAGCTGTCATTTTCAACATCCCCCTCGGCTGTTTGGTCACTGGCCCATAACGTCAAGTTGTCTCTTAAAAGTTGCATAATTAGTGTGCTGTCTTTGTAGGAATCATCTTGAAGCTGATCTAGTTCTGCTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAATTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGTAAATTTTCGGCAGCCGTAGTAGCCTTTGTGTAAGCATCCAATGATTCTGGACCACTCTGTCCGAGATCATCAGTGGAACCTCAGCGAGATACGGTATATCGCCTTGATTTT]




>consensus_4342#1
TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGATATAATAAATAT
TACATAACGGAGTTTAGCTGTCATTTTCAACATCCCCCTCGGCTGTTTGGTCACTGGCCC
ATAACGTCAAGTTGTCTCTTAAAAGTTGCATAATTAGTGTGCTGTCTTTGTAGGAATCAT
CTTGAAGCTGATCTAGTTCTGCTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACG
CCTTAGCAGCATCATTTTGAATTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAAACCAA
GACGAATTGGATGAGTGGTAGGTAAATTTTCGGCAGCCGTAGTAGCCTTTGTGTAAGCAT
CCAATGATTCTGGACCACTCTGTCCGAGATCATCAGTGGAACCTCAGCGAGATACGGTAT
ATCGCCTTGATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4342#0      GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGA 60
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      ATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTAC 120
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      GAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTG 180
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      TTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTT 240
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      ATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATC 300
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      AATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGAT 360
consensus_4342#1      ------------------------------------------------------------
                                                                                  

consensus_4342#0      GGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGAT 420
consensus_4342#1      -----------TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGAT 49
                                 *  *      ** * *  * **    ** *   * *    **    ***

consensus_4342#0      AGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAG 480
consensus_4342#1      A--TAAT--AAATATTACATAACGGAGTTTAG--CTGTCATTTTCAACATCCCCCT--CG 101
                      *   **   **** *  *** ** **   * *   * * ** **  *    **  *   *

consensus_4342#0      GTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAA 540
consensus_4342#1      GCTGTTTGG------TCACTGGCCCATAACG-------TCAAGTTGTCTCTTAA---AAG 145
                      * ** *  *      **  ** * *  ****       *** ** *    *      ** 

consensus_4342#0      TCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGGTGTCAT 600
consensus_4342#1      TTGCATAATTAGTGT---GCTGTCTTTGTAGGA-ATCATCTTGAAGCTGATCTAGTTCTG 201
                      * * * *** **  *   ** **   ** *  * *   *****  **  *      **  

consensus_4342#0      GGTCTGTCGTATGTGGNGNCGGNCCGACCAAGCTNAA-ATATCATCTTGATAGAGCTAAA 659
consensus_4342#1      CTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAA 261
                          **  * **     *       * * **     *    * * *   **     * **

consensus_4342#0      TCACGTGAA-GAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACA 718
consensus_4342#1      TTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAA-ACCAAGACGAATTGGATGA-GTGGT 319
                      *  *** ** *** *   *  *****   *  **   ***** ***     *** *    

consensus_4342#0      ACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACG 778
consensus_4342#1      AGGTAAATTTTCGGCAG--CCGTAGTAGCCT-TTGTGTAAGCATCCAATGATTCTGGACC 376
                      * *****  *     **  *   *  * *    **   **        ****  ** ** 

consensus_4342#0      ACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACC 838
consensus_4342#1      AC--TCTGTCCGAGATCATCAGTGGAACCTC-----AGCGAGATACGGTATA-TCGCCTT 428
                      **  *  *    *** * *    *   * *      *** * * *   **** * *    

consensus_4342#0      AGTTGTAGAGGAGAAGAAATCACGT 863
consensus_4342#1      GATTTT------------------- 434
                        ** *