cluster # 4363

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Schistosoma mansoni
cluster # 4363 cluster # 4363 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4363#0 length = 779 sequences # 2

consensus_4363#1 length = 204 sequences # 1

consensusID : consensus_4363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence

                              [GCTATCCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATTTAGTTAAAGTCGAAATCCCAGGCACTGGTAGTCGTAAAGAAATATGGATAATGACGCCTGAAGAGAAATCGGCAACTGTACCAATTTTACGTGAAGAAGGTAATCAATTGTATAATCGTGGGGAATATAATGAGGCTGCTGCATGTTATAGTGAAGCGTTAGGCATTTTAGAACAGTTAATTTTACGAGAAAAACCAGGAGAACCGGAGTGGATTGTATTGGACAAGTTACAAATACCTTTATTCGTTAATCTTGCACAATGTCAATTTAAAGAAAAAGACTACTATGCTGCAATAAAAAGTACTACTGAAGCGTTGTCAAGAGATCCTACAAATGTAAAAGCACTTTATCGCAGGTCTAAGGCGTATACAGAAACTTGGGACTTTGATCTAGCTGCTGAGGATCTACGTAAGCTAGCCGTTTGTCGTCCGGATATGAAGAACACAGTCAAAAATGAACTAAACATTATCGAGGCTAAACGTGTTGACGAAGAAGTCAAAGGAAGACANAAACTAGCTGGGAAACTCCTCGCTTGTACAAAATCAGTCCCAGAATCAAATATAAATTAAAGGTGTATCAGAATAAATTCAGAAATATTCATGTCAGTATTATGTGTACTTTGAATATCTGAAAATGGATTCAAGGTTTGTGCATTTATGATAGAACGGTCGGATTTTGGCCTGCGTCTCRCTTAATTATTCTTGACTGTGATATTAATT]

[+] EMBL CD145816             [GCTATCCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATTTAGTTAAAGTCGAAATCCCAGGCACTGGTAGTCGTAAAGAAATATGGATAATGACGCCTGAAGAGAAATCGGCAACTGTACCAATTTTACGTGAAGAAGGTAATCAATTGTATAATCGTGGGGAATATAATGAGGCTGCTGCATGTTATAGTGAAGCGTTAGGCATTTTAGAACAGTTAATTTTACGAGAAAAACCAGGAGAACCGGAGTGGATTGTATTGGACAAGTTACAAATACCTTTATTCGTTAATCTTGCACAATGTCAATTTAAAGAAAAAGACTACTATGCTGCAATAAAAAGTACTACTGAAGCGTTGTCAAGAGATCCTACAAATGTAAAAGCACTTTATCGCAGGTCTAAGGCGTATACAGAAACTTGGGACTTTGATCTAGCTGCTGAGGATCTACGTAAGCTAGCCGTTTGTCGTCCGGATATGAAGAACACAGTCAAAAATGAACTAAACATTATCGAGGCTAAACGTGTTGACGAAGAAGTCAAAGGAAGACANAAACTAGCTGGGAA                                                                                                                                                                                                    ]
[-] EMBL SMAA28890            [                                                                                                                                                                                                                                                                                                                                                                                                                AGCACTTTATCGCGGGTCTAA GCGTATACAGAAACTTGGGNCTTTGNGCTAGCTGCTGAGGATCTCCGTAAGCTAGCCGTTTGTCGACCGGATATGAAGAACACAGTTAAAAATGNACTAAACATTATCGAGGCTAAACGTGTTGACGAAGAAGTCAAAGGAAGACAAAAACTAGCTGGGAAACTCCTCGCTTGTACAAAATCAGTCCCAGAATCAAATATAAATTAAAGGTGTATCAGAATAAATTCAGAAATATTCATGTCAGTATTATGTGTACTTTGAATATCTGAAAATGGATTCAAGGTTTGTGCATTTATGATAGAACGGTCGGATTTTGGCCTGCGTCTCRCTTAATTATTCTTGACTGTGATATTAATT]




>consensus_4363#0
GCTATCCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATT
TAGTTAAAGTCGAAATCCCAGGCACTGGTAGTCGTAAAGAAATATGGATAATGACGCCTG
AAGAGAAATCGGCAACTGTACCAATTTTACGTGAAGAAGGTAATCAATTGTATAATCGTG
GGGAATATAATGAGGCTGCTGCATGTTATAGTGAAGCGTTAGGCATTTTAGAACAGTTAA
TTTTACGAGAAAAACCAGGAGAACCGGAGTGGATTGTATTGGACAAGTTACAAATACCTT
TATTCGTTAATCTTGCACAATGTCAATTTAAAGAAAAAGACTACTATGCTGCAATAAAAA
GTACTACTGAAGCGTTGTCAAGAGATCCTACAAATGTAAAAGCACTTTATCGCAGGTCTA
AGGCGTATACAGAAACTTGGGACTTTGATCTAGCTGCTGAGGATCTACGTAAGCTAGCCG
TTTGTCGTCCGGATATGAAGAACACAGTCAAAAATGAACTAAACATTATCGAGGCTAAAC
GTGTTGACGAAGAAGTCAAAGGAAGACANAAACTAGCTGGGAAACTCCTCGCTTGTACAA
AATCAGTCCCAGAATCAAATATAAATTAAAGGTGTATCAGAATAAATTCAGAAATATTCA
TGTCAGTATTATGTGTACTTTGAATATCTGAAAATGGATTCAAGGTTTGTGCATTTATGA
TAGAACGGTCGGATTTTGGCCTGCGTCTCRCTTAATTATTCTTGACTGTGATATTAATT

consensusID : consensus_4363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [CCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATTTAGTAGTTATCATAATGTAATTTCTTGGTGTTTTGGAAAAGAAAATCAYTCTTGAGTATAATTAATCTAAATTATAAAGATAGATTTCATACAATATGAACAGTTTAATTATATGTATCGTGAATACGCGTTTCACGTACGAGTCATGT]

[+] EMBL BE519446             [CCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATTTAGTAGTTATCATAATGTAATTTCTTGGTGTTTTGGAAAAGAAAATCAYTCTTGAGTATAATTAATCTAAATTATAAAGATAGATTTCATACAATATGAACAGTTTAATTATATGTATCGTGAATACGCGTTTCACGTACGAGTCATGT]




>consensus_4363#1
CCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATTTAGTA
GTTATCATAATGTAATTTCTTGGTGTTTTGGAAAAGAAAATCAYTCTTGAGTATAATTAA
TCTAAATTATAAAGATAGATTTCATACAATATGAACAGTTTAATTATATGTATCGTGAAT
ACGCGTTTCACGTACGAGTCATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4363#0      GCTATCCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATT 60
consensus_4363#1      -----CCAGATTTGGACGAGTTGATGATGAAACCTGAAGCACTTGAATTTATTTTTGATT 55
                           *******************************************************

consensus_4363#0      TAGTTAAAGTCGAAATCCCAGGCACTGGTAGTCGTAAAGAAATATGGATAATGACGCCTG 120
consensus_4363#1      TAGTAGTTATCATAATGTAATTTCTTGGT-GTTTTGGAAAA-----GAAAATCAYTCTTG 109
                      ****     **  ***   *     **** **  *  * **     ** *** *  * **

consensus_4363#0      AAGAGAAATCGGCAACTGTACCAATTTTACGTGAAGAAGGTAATCAATTGTATAATCGTG 180
consensus_4363#1      AGTATAATTAATCTAAATTATAAAGATAGATTTCATACAATA-TGAACAGTTTAATTATA 168
                      *  * ** *   * *   **  **  *    *  * *   ** * **  ** ****  * 

consensus_4363#0      GGGAATATAATGAGGCTGCTGCATGTTATAGTGAAGCGTTAGGCATTTTAGAACAGTTAA 240
consensus_4363#1      TGTATCGTGAATACGC-GTTTCACGTACGAGTCATGT----------------------- 204
                       * *   * *  * ** * * ** **   *** * *                        

consensus_4363#0      TTTTACGAGAAAAACCAGGAGAACCGGAGTGGATTGTATTGGACAAGTTACAAATACCTT 300
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      TATTCGTTAATCTTGCACAATGTCAATTTAAAGAAAAAGACTACTATGCTGCAATAAAAA 360
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      GTACTACTGAAGCGTTGTCAAGAGATCCTACAAATGTAAAAGCACTTTATCGCAGGTCTA 420
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      AGGCGTATACAGAAACTTGGGACTTTGATCTAGCTGCTGAGGATCTACGTAAGCTAGCCG 480
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      TTTGTCGTCCGGATATGAAGAACACAGTCAAAAATGAACTAAACATTATCGAGGCTAAAC 540
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      GTGTTGACGAAGAAGTCAAAGGAAGACANAAACTAGCTGGGAAACTCCTCGCTTGTACAA 600
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      AATCAGTCCCAGAATCAAATATAAATTAAAGGTGTATCAGAATAAATTCAGAAATATTCA 660
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      TGTCAGTATTATGTGTACTTTGAATATCTGAAAATGGATTCAAGGTTTGTGCATTTATGA 720
consensus_4363#1      ------------------------------------------------------------
                                                                                  

consensus_4363#0      TAGAACGGTCGGATTTTGGCCTGCGTCTCRCTTAATTATTCTTGACTGTGATATTAATT 779
consensus_4363#1      -----------------------------------------------------------