cluster # 4420

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Schistosoma mansoni
cluster # 4420 cluster # 4420 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4420#0 length = 463 sequences # 1

consensus_4420#1 length = 407 sequences # 2

consensusID : consensus_4420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCGCATTGGCACGCATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA]

[+] EMBL CD167786             [CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCGCATTGGCACGCATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA]




>consensus_4420#0
CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCA
CATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCAT
TCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCGCATTGGCACGCA
TAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACA
TCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAAT
CACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCT
CTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTG
CCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA

consensusID : consensus_4420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 407
fasta sequence

                              [TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGTTGACTAACCACATTCGGCTTATCTTCACACAAACTTGAACTCACTAGCTTCTCTCTCGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGTCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTATTATTTGTGGGTCTTTCATATTCTCTTTGTTCTGTGAGC]

[+] EMBL CD087021             [TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGTTGACTAACCACATTCGGCTTATCTTCACACAAACTTGAACTCACTAGCTTCTCTCTCGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGTCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTATTATTTGT                               ]
[+] EMBL CD169913             [                                                                                                                    CGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAGGACGCCAACTCTTCACGCAGTGGACTAACCACATTCGACTTATCTTCACACAAACTGGAACTCACTAGCTTCTCTCTGGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGCCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTTTATTTCTTTATTATTGGTGGGTCTTTCATATTCTCTTTGTTCTGTGAGC]




>consensus_4420#1
TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCA
AATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGTCAACAAACGCC
GAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTT
CATAACAAGACGCCAACTCTTCACGCAGTTGACTAACCACATTCGGCTTATCTTCACACA
AACTTGAACTCACTAGCTTCTCTCTCGTCATCTCCACTGCACTCATGGTCGACTGGTCTA
CGGTCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTNTA
TTTCTTTATTATTTGTGGGTCTTTCATATTCTCTTTGTTCTGTGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4420#0      CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCA 60
consensus_4420#1      ------------------------------------------------------------
                                                                                  

consensus_4420#0      CATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCAT 120
consensus_4420#1      ---------------TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCAT 45
                                     *********************************************

consensus_4420#0      TCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAA--CACATCCGCATTGGCACG 178
consensus_4420#1      TCACTTCGTC--TCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTT 103
                      *********   ****  *   * ****  * *****  *  * ** *  ** *  *   

consensus_4420#0      CATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTA 238
consensus_4420#1      CACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGA 163
                      ** * *   ****   **    **   *  *  **  ** ***  ****  *  **   *

consensus_4420#0      CATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAA 298
consensus_4420#1      CAGCTTCACTATCTGTTCATAAC-----AAGACGCCAACTCTT-CACGCA-GTTGACTAA 216
                      ** *  *   * ** *** *  *     ** **  * **  *  ******   ** * **

consensus_4420#0      ATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACAC 358
consensus_4420#1      CCACATTCGGCTTATCTTCACA-CAAACTTGAACTCACTAGCTTCTCTC-TCGTCATCTC 274
                            ***   *  ** ****     * * ****** *  ****   * *** *  * *

consensus_4420#0      CTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTC 418
consensus_4420#1      CACTGCACTCATGGTCGACTGGTCTACGGTCG-ACGGATAGG---TAAATCCTGATGTTA 330
                      * ** *  ** *   * **   ** **  * * *** ***      *****  *  *** 

consensus_4420#0      ----TGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA----------- 463
consensus_4420#1      ACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTAT-TATTTGTGGGTCTTTCATAT 389
                          **  **    * *    *    *   *  ***  *  **  * *            

consensus_4420#0      ------------------
consensus_4420#1      TCTCTTTGTTCTGTGAGC 407