cluster # 450

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Schistosoma mansoni
cluster # 450 cluster # 450 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_450#0 length = 467 sequences # 1

consensus_450#1 length = 367 sequences # 1

consensusID : consensus_450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTATCAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTTGCCGGTGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTTTGTTCCTGAAAGCGCAGAGACGCACTAGCGTTGTCTGTCGTCGCATTGGGGACAACAGAGAAGGATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTTGTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT]

[+] EMBL CD145533             [TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTATCAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTTGCCGGTGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTTTGTTCCTGAAAGCGCAGAGACGCACTAGCGTTGTCTGTCGTCGCATTGGGGACAACAGAGAAGGATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTACAGTTGTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTTGTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT]




>consensus_450#0
TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTAT
CAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTTGCCGGTG
TGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTTTG
TTCCTGAAAGCGCAGAGACGCACTAGCGTTGTCTGTCGTCGCATTGGGGACAACAGAGAA
GGATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTACAGTT
GTATGGCGAATGAGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAGATTGTGT
TTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTTGTTGTTG
TTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT

consensusID : consensus_450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGATTTGAACTCCGCAGACGACCTAGCCTTCCTATCTCATACACACGAACAAATACAGACGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAGGCCTCAGCATACACAAAGGAGAAAGCAAGATTCTCATATAAAACACGGAGAACACCAACTCAATCACAATTGATGGAGAAACTCTGGAAGGTGTAGAAATATTCACGTATCTGGGAAGCATCATTGATGAACAAGCAGAATCTGATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATATGGAACTCAAAACAACTCTC]

[+] EMBL CD094202             [AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGATTTGAACTCCGCAGACGACCTAGCCTTCCTATCTCATACACACGAACAAATACAGACGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAGGCCTCAGCATACACAAAGGAGAAAGCAAGATTCTCATATAAAACACGGAGAACACCAACTCAATCACAATTGATGGAGAAACTCTGGAAGGTGTAGAAATATTCACGTATCTGGGAAGCATCATTGATGAACAAGCAGAATCTGATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATATGGAACTCAAAACAACTCTC]




>consensus_450#1
AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGATTTGAACTCCGCAG
ACGACCTAGCCTTCCTATCTCATACACACGAACAAATACAGACGGAGACAGCAAATGTAG
CAGCGGCCTCTGCATCAATAGGCCTCAGCATACACAAAGGAGAAAGCAAGATTCTCATAT
AAAACACGGAGAACACCAACTCAATCACAATTGATGGAGAAACTCTGGAAGGTGTAGAAA
TATTCACGTATCTGGGAAGCATCATTGATGAACAAGCAGAATCTGATGCAGATGTAAAGG
CAAGGATTGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATATGGAACTCAAAAC
AACTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_450#0      TTGTCCTCACGGATTCTGTCAGTTTGCTGGAAGATGTGGATGTCAGTGAAGTTTGATTAT 60
consensus_450#1      ------------------------------------------------------------
                                                                                 

consensus_450#0      CAGTGAGTGTTGTTGGTGTTGATGTGGATGTGGATGGAGTGCTCGTGAATGTT--GCCGG 118
consensus_450#1      --------------AGGGGAAGCACGGAATACAATGGGCATCTCAGAATCAATTAGACGA 46
                                    * *       ***     ****    ***   *    *  * ** 

consensus_450#0      TGTGCGATCAGTAGTGAATGAAAGAGCTTATTCTGTCGAGTGTAGTTGTGCAGTTATTTT 178
consensus_450#1      TTTGAACTCCGCAG---ACGACCTAGCCT-TCCTATCTCATACACACGAACAAATACAGA 102
                     * **   ** * **   * **   *** * * ** **   *  *   *  **  **    

consensus_450#0      TGTTC-CTGAAAGCGCAGAGACGCACTA-GCGTTGTCTGTCGTCGCATTGGGGACAACAG 236
consensus_450#1      CGGAGACAGCAAATGTAGCAGCGGCCTCTGCATCAATAG--GCCTCAGCATACACAAAGG 160
                      *    * * **  * **   **  **  ** *     *  * * **      ****  *

consensus_450#0      AGAAGG-ATGATTCCATAGTGGGTGAGATGGTAATGATGCTGTTTCAATGTGGGATTGTA 295
consensus_450#1      AGAAAGCAAGATTCT----CATATAAAACACGGAGAACACCAACTCAATCACAATTGATG 216
                     **** * * *****         * * *     *  *  *    *****      *  * 

consensus_450#0      CAGTTG-TATGGCGAATG-AGATGAATTGAAGTGATCATGTGATGTGGTATTGATGATAG 353
consensus_450#1      GAGAAACTCTGGAAGGTGTAGAAATATTCACGT-ATC-TGGGAAGCATCATTGATGAACA 274
                      **    * ***    ** ***   *** * ** *** ** ** *    ********   

consensus_450#0      ATTGTGTTTTTCTAGCGACGTGTTTGTTTCCGTAATAACTGTAAGAGTGTTTACTTTGTT 413
consensus_450#1      AGCAGAATCT------GATGCAGATGTAAAGGCAAGGATTGGCAAAGCAAGGACCGCATT 328
                     *      * *      ** *    ***    * **  * **  * **     **    **

consensus_450#0      GTTGTTGTTGTGTGTGTGTGTGTGTGTGAGAATGACTAGGTGCTTGTTGTTAGT 467
consensus_450#1      CCTACAATTGAA-GAACATATGGAACTCAAAACAACTCTC-------------- 367
                       *    ***   *    * **    * * **  ***