cluster # 4529

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4529 cluster # 4529 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4529#0 length = 514 sequences # 1

consensus_4529#1 length = 427 sequences # 2

consensusID : consensus_4529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TAATATTTATGACAGTTGCAATCATTCTTATTTGGTGTGTAAAACAATATGTAGTATCTGTAAAAAGCACTCACAGCCGATGTATGATCTACATTCATTTCGCTGTTATTGAGTAACAATTTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGCTGTAGTGCCACTGCAAGTGGCGTGAAGCCATCCTGAATAAAGAAAGTAGAGAATCGTGATATATTAAATAAGCAATTGTTTGGAAATCTCAGTGTATAGAAAATACCAAACGGAAAAATTTTAGTTCAACAATGAGGACATACGGAATTGATGACATCGATAAAAATAACTTCTTCACCAAACAAAATGAGAAATTTATCCGTAATGTTCTAAGATAAGCACTACCAGAAAGACTGTTTTACAGTGTTTCTTCATTATTAGCTTATTTGAAAAAAATGTAGTT]

[+] EMBL CD191913             [TAATATTTATGACAGTTGCAATCATTCTTATTTGGTGTGTAAAACAATATGTAGTATCTGTAAAAAGCACTCACAGCCGATGTATGATCTACATTCATTTCGCTGTTATTGAGTAACAATTTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGCTGTAGTGCCACTGCAAGTGGCGTGAAGCCATCCTGAATAAAGAAAGTAGAGAATCGTGATATATTAAATAAGCAATTGTTTGGAAATCTCAGTGTATAGAAAATACCAAACGGAAAAATTTTAGTTCAACAATGAGGACATACGGAATTGATGACATCGATAAAAATAACTTCTTCACCAAACAAAATGAGAAATTTATCCGTAATGTTCTAAGATAAGCACTACCAGAAAGACTGTTTTACAGTGTTTCTTCATTATTAGCTTATTTGAAAAAAATGTAGTT]




>consensus_4529#0
TAATATTTATGACAGTTGCAATCATTCTTATTTGGTGTGTAAAACAATATGTAGTATCTG
TAAAAAGCACTCACAGCCGATGTATGATCTACATTCATTTCGCTGTTATTGAGTAACAAT
TTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTC
CCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGCTGTAGTGCC
ACTGCAAGTGGCGTGAAGCCATCCTGAATAAAGAAAGTAGAGAATCGTGATATATTAAAT
AAGCAATTGTTTGGAAATCTCAGTGTATAGAAAATACCAAACGGAAAAATTTTAGTTCAA
CAATGAGGACATACGGAATTGATGACATCGATAAAAATAACTTCTTCACCAAACAAAATG
AGAAATTTATCCGTAATGTTCTAAGATAAGCACTACCAGAAAGACTGTTTTACAGTGTTT
CTTCATTATTAGCTTATTTGAAAAAAATGTAGTT

consensusID : consensus_4529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 427
fasta sequence

                              [AATAGATATTCCACAGTATCAGTTTGACCTGCACGAGACGCACAGTGTAAAGGTGTTAGTCCATCTCGTGTACGGCTATTCACTTCAGCTCCTGCTAGAATCAGTTCGCTTACAACTTCATTCTTTCCACATTTAGCAGCTACATGTAACGGTGTTATGCAATTTTTTGCCTGGAAATTAATATTCGCTCCTTTTTCAATCAACAACTTAGCTATATTAACATTCCCATAGTGAGCGGCAATGTGTAAAGGCGTAAATCCACTAGCCGATGTATGATCTACATTCATTTCGCTGTTATTGAGTAACAATTTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGCTGTAGTG]

[-] EMBL CD195546             [AATAGATATTCCACAGTATCAGTTTGACCTGCACGAGACGCACAGTGTAAAGGTGTTAGTCCATCTCGTGTACGGCTATTCACTTCAGCTCCTGCTAGAATCAGTTCGCTTACAACTTCATTCTTTCCACATTTAGCAGCTACATGTAACGGTGTTATGCAATTTTTTGCCTGGAAATTAATATTCGCTCCTTTTTCAATCAACAACTTAGCTATATTAACATTCCCATAGTGAGCGGCAATGTGTAAAGGCGTAAATCCACTAGCCGATGTATGATCTACATT                                                                                                                                               ]
[+] EMBL CD067947             [        tgCCACATTATCGNNTTGACCTGCACGAGACGCACAGTGTAAAGGTGTTAGTCCATCTCGTGTACGGCTATTCACTTCAGCTCCTGCTAGAATCAGTTCGCTTACAACTTCATTCTTTCCACATTTAGCAGCTACATGTAACGGTGTTATGCAATTTTTTGCCTGGAAATTAATATTCGCTCCTTTTTCAATCAACAACTTAGCTATATTAACATTCCCATAGTGAGCGGCAATGTGTAAAGGCGTAAATCCACTAGCCGATGTATGATCTACATTCATTTCGCTGTTATTGAGTAACAATTTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGCTGTAGTG]




>consensus_4529#1
AATAGATATTCCACAGTATCAGTTTGACCTGCACGAGACGCACAGTGTAAAGGTGTTAGT
CCATCTCGTGTACGGCTATTCACTTCAGCTCCTGCTAGAATCAGTTCGCTTACAACTTCA
TTCTTTCCACATTTAGCAGCTACATGTAACGGTGTTATGCAATTTTTTGCCTGGAAATTA
ATATTCGCTCCTTTTTCAATCAACAACTTAGCTATATTAACATTCCCATAGTGAGCGGCA
ATGTGTAAAGGCGTAAATCCACTAGCCGATGTATGATCTACATTCATTTCGCTGTTATTG
AGTAACAATTTAGCAGCATGAACATCATCTTTCTTTGCAGCAATATGTAGAGCGGGTAAG
CGACTTTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCATGTCCTTGC
TGTAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4529#0      TAATATTTATGACAGTTGCAATCATTCTTATTTGGTGTGTAAAACAATATGTAGTATCTG 60
consensus_4529#1      --------AATAGATATTCCACAGTATCAGTTTGACCTGCA---CGAGACGCACAGTGTA 49
                              *  * *  * * *   *     ****   ** *   * * * * *   * * 

consensus_4529#0      TAAAAAGCACTCACAGCCGATGTATGATCTACATTCATTTC-GCTGTTATTGAGTAACAA 119
consensus_4529#1      AAGGTGTTAGTC-CATCTCGTGTACGGCT---ATTCACTTCAGCTCCTGCT-AGAATCAG 104
                       *      * ** ** *   **** *      ***** *** ***  *  * ** * ** 

consensus_4529#0      TTTAGCAGCATGAACATCATCTTT---CTTTGCAGCAATATGTAGAGCGGGTAAGCGACT 176
consensus_4529#1      TTCGCTTACAACTTCATTCTTTCCACATTTAGCAGCTACATGTAACGGTGTTATGCAATT 164
                      **      **    ***  * *      ** ***** * *****  *  * ** ** * *

consensus_4529#0      TTTCCCGCGAGAATCCCTTTCCAGCAACAGGCTTATAACACGATCA-TGTCCTTGCTGTA 235
consensus_4529#1      TTTTGCCTGGAAATTAATATTC--------GCTCCTTTTTCAATCAACAACTTAGCTATA 216
                      ***  *  *  ***   * * *        ***  *    * ****    * * *** **

consensus_4529#0      GTGCCACTGCAAGTGGCGTGAAGCCATCCTGAATAAAGAAAGTAGAGAATCGTGATATAT 295
consensus_4529#1      TTAACATTCCCA-TAGTGAGCGGCAATGTGTAAAGGCGTAAATCCACTAGC-CGATGTAT 274
                       *  ** * * * * * * *  ** **    **    * ** *  *  * *  *** ***

consensus_4529#0      TAAATAAGCAATTGTTTGGAAATCTCAGTGTATAGAAAATACCAAACGGAAAA--ATTTT 353
consensus_4529#1      --GATCTACATTCATTTCGCTGTTATTGAGTA-ACAATTTAGCAGCATGAACATCATCTT 331
                         **   ** *  *** *   *    * *** * **  ** **    *** *  ** **

consensus_4529#0      AGTT--CAACAATGAGGACATACGG-AATTGATGACATCGATAAAAATAACTTCTTCACC 410
consensus_4529#1      TCTTTGCAGCAATATGTAGAGCGGGTAAGCGACTTTTCCCGCGAGAATCCCTTTCCAGC- 390
                        **  ** ****  * * *   ** **  **      *    * ***  ***     * 

consensus_4529#0      AAACAAAATGAGAAATTTATCCGTAATGTTCTAAGATAAGCACTACCAGAAAGACTGTTT 470
consensus_4529#1      -AACAGGCTTATAACACGATC----ATGTCCTTGCTGTAGTG------------------ 427
                       ****   * * **    ***    **** **      **                    

consensus_4529#0      TACAGTGTTTCTTCATTATTAGCTTATTTGAAAAAAATGTAGTT 514
consensus_4529#1      --------------------------------------------