cluster # 4549

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Schistosoma mansoni
cluster # 4549 cluster # 4549 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4549#0 length = 510 sequences # 2

consensus_4549#1 length = 225 sequences # 1

consensusID : consensus_4549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 510
fasta sequence

                              [CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAAATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGGGTAGACGATAGTTTAAGTGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTATGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAACAACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAATATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGTTACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACGCTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCAT]

[+] EMBL CD153213             [CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAAATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGGGTAGACGATAGTTTAAGTGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTATGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAACAACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAATATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGTTACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACGCTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCA ]
[-] EMBL CD153160             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTCTTCAAACATCACTCANCCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCAT]




>consensus_4549#0
CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAA
ATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGGGTAGACGATAGTTTAA
GTGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTATGA
TGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAACAAC
CAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAATATA
CTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGTTAC
ATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACGCTT
CTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACA
ACAGTTCAGCTGCATCATTACTTCCACCAT

consensusID : consensus_4549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTG]

[+] EMBL CD064584             [ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTG]




>consensus_4549#1
ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGA
TGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTC
CGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGTGAA
GGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4549#0      CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAA 60
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      ATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGG-GTAGACGATAGTTTA 119
consensus_4549#1      ----------------------------ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGA 32
                                                  ******** **  **  *  ** * *   * *

consensus_4549#0      AG--TGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTA 177
consensus_4549#1      AGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAA---CCCGAACTCGATG 89
                      **  **     * ** ***   **  **** * *     *** *    * *   * * * 

consensus_4549#0      TGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAAC 237
consensus_4549#1      TCTCCATGGAGGTTCCCGATGTTGAT-GTGTCCGCCTCTGGGCCCGAAAT-CGGTGTATC 147
                      *    *** * * **    ** * **  ***    *          * **   *   * *

consensus_4549#0      AACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAAT 297
consensus_4549#1      AGGTGGTGCGATTAGAGGTGGGGAGTTGG-TGAAGGCGTATTTGAAGGTGAGACGGAAGC 206
                      *     *  **  **** *   ** *    *     *  ****     *   *** **  

consensus_4549#0      ATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGT 357
consensus_4549#1      CGAGT--CGGCAGTCGAAGTG--------------------------------------- 225
                        * *   ** *  *  *                                          

consensus_4549#0      TACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACG 417
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      CTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACAC 477
consensus_4549#1      ------------------------------------------------------------
                                                                                  

consensus_4549#0      ACAACAGTTCAGCTGCATCATTACTTCCACCAT 510
consensus_4549#1      ---------------------------------