cluster # 4559

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Schistosoma mansoni
cluster # 4559 cluster # 4559 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4559#0 length = 219 sequences # 1

consensus_4559#1 length = 195 sequences # 1
consensus_4559#2 length = 81 sequences # 1

consensusID : consensus_4559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [TGTTATATTTTAACAGATGCATTAAAACGTTTTGAAGAACGTCTCACATTAATAAAACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATATTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA]

[+] EMBL CD131928             [TGTTATATTTTAACAGATGCATTAAAACGTTTTGAAGAACGTCTCACATTAATAAAACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATATTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA]




>consensus_4559#0
TGTTATATTTTAACAGATGCATTAAAACGTTTTGAAGAACGTCTCACATTAATAAAACAG
TATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATA
ACTAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACA
TATTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA

consensusID : consensus_4559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAACAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCTCACGATTAATCAAGACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAG]

[-] EMBL SMAA69320            [GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAACAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCTCACGATTAATCAAGACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAG]




>consensus_4559#1
GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAA
CAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCTCACGATTAATCAAGACAGTAT
CCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACT
AATGGATGTGACGAG

consensusID : consensus_4559#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 81
fasta sequence

                              [CTCGTCACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGATTTAGAACATTATATT]

[+] EMBL SMAA69301            [CTCGTCACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGATTTAGAACATTATATT]




>consensus_4559#2
CTCGTCACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGA
GTAGATTTAGAACATTATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4559#0      ----------------------------------------------TGTTATA-TTTTAA 13
consensus_4559#1      GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAA 60
consensus_4559#2      -------------------------------------------------------CTCGT 5
                                                                              *   

consensus_4559#0      CAGATGCAT---TAAAACGT---TTTGAA--GAACGTCT-CAC-ATTAAT-AAAACAGTA 62
consensus_4559#1      CAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCT-CACGATTAATCAAGACAGTA 119
consensus_4559#2      CACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGA 65
                      ** ** ***     *    *   *        *  *  *  *  ***  * ** *    *

consensus_4559#0      TCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAAC 122
consensus_4559#1      TCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAAC 179
consensus_4559#2      TTTAGAACATTATATT-------------------------------------------- 81
                      *    **     ** *                                            

consensus_4559#0      TAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATA 182
consensus_4559#1      TAATGGATGTGACGAG-------------------------------------------- 195
consensus_4559#2      ------------------------------------------------------------
                                                                                  

consensus_4559#0      TTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA 219
consensus_4559#1      -------------------------------------
consensus_4559#2      -------------------------------------