cluster # 4657

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Schistosoma mansoni
cluster # 4657 cluster # 4657 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4657#0 length = 424 sequences # 2

consensus_4657#1 length = 365 sequences # 1

consensusID : consensus_4657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [GTATTATGTGATGGGTTGATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTCATTCTGCCTGTTAGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA]

[+] EMBL CD068450             [GTATTATGTGATGGGTTGATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTCATTCTGCCTGTTAGCGGC                                     ]
[-] EMBL CD182126             [                                                                                                                                     CGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTATTATCGTCTCTGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGTAATTCTGCCTGTTTGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA]




>consensus_4657#0
GTATTATGTGATGGGTTGATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTG
CAGGAGCAAGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTG
GACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGT
GAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAAT
TTTTCCTATTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGA
ACTGACTAAATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGAT
AAACCTGTCATTCTGCCTGTTAGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGAT
ACCA

consensusID : consensus_4657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATGCCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGTGACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTAT]

[+] EMBL CD160223             [CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATGCCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGTGACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCAAGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGTTTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACCGGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTATTTAT]




>consensus_4657#1
CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATG
CCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGT
GACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCA
AGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGT
TTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACC
GGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTA
TTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4657#0      ------------------------------------------------------------
consensus_4657#1      CGATTCCCAACTGGGCTGTCTGCATCTAAAGCATCTCGAATCTTTTGTAATAGTGAAATG 60
                                                                                  

consensus_4657#0      ---------------------------------------------------GTATTATGT 9
consensus_4657#1      CCAATCCCCGTAGTCAGTTGGATTGCATCAACAACACTTACATCTCGAACTGACGAACGT 120
                                                                         *    * **

consensus_4657#0      GATGGGTT-GATGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCA 68
consensus_4657#1      GACTTTTTAGGTGGGTTGAGAGACGGGACAACGTTTGGGAATATACTTTGTGCAGGAGCA 180
                      **    ** * *************************************************

consensus_4657#0      AGTCGTTTCAACTTTTTGGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGT 128
consensus_4657#1      AGTCGTTTCAACTTTTTAGTATCAGGATTCGCAGGACTTCCCTCCTGACCTGGACGCTGT 240
                      ***************** ******************************************

consensus_4657#0      TTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACC 188
consensus_4657#1      TTACACGAAGATAGTGCTAAGCTGATACCTTCTGAAACACGATTTATCAAGTGAGGCACC 300
                      ************************************************************

consensus_4657#0      GGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTA 248
consensus_4657#1      GGAACAGATGGATCTAATACATCAGATCCACTAAGCTGTGAATAGCTGGAATTTTTCCTA 360
                      ************************************************************

consensus_4657#0      TTTATTATCGTCTCCGTAACAGCACTTGTGACACCAAATGATTCAGGTAGGAACTGACTA 308
consensus_4657#1      TTTAT------------------------------------------------------- 365
                      *****                                                       

consensus_4657#0      AATTCTTGAAGTAGATCTTCTTGACCGCCAAAAAGCTTGGCGACGTCCTGATAAACCTGT 368
consensus_4657#1      ------------------------------------------------------------
                                                                                  

consensus_4657#0      CATTCTGCCTGTTAGCGGCACATGGGGTCCGAATGCCGTTGTTCCTTTTGATACCA 424
consensus_4657#1      --------------------------------------------------------