cluster # 4695

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Schistosoma mansoni
cluster # 4695 cluster # 4695 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4695#0 length = 658 sequences # 1

consensus_4695#1 length = 492 sequences # 2

consensusID : consensus_4695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCATACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGA]

[+] EMBL CD168550             [GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCATACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGA]




>consensus_4695#0
GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCATACACGACGAGCACAAGC
CTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGGAGACTCAAGCGACAGACA
GCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCG
TAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTT
TGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATG
AACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATGCTTCGTTGATGGATGTTC
GGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATT
TGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACA
TTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGG
AGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAAACGGAGATTGAGG
ACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGA

consensusID : consensus_4695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 492
fasta sequence

                              [CACGAGTCACGGTGGACATTTCCACGAGTC-ACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGAC--GTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAGGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAGAACGACGTGATTTG]

[-] EMBL CD068586             [CACGAGTCACGGTGGACATTTCCACGAGTC ACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGAC  GTCGACCATGAGTG                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD170991             [                  agctttCGAGACGACGCCT CAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAATGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACCCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAGGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAGAACGACGTGATTTG]




>consensus_4695#1
CACGAGTCACGGTGGACATTTCCACGAGTCACGGTTGGAGCGACTACTCCTCAGAATGCA
TACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGG
AGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGAT
TTACCTATCCGTCGACCGTAGACGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAGG
CTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAG
TTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATGCT
TCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGA
GAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAGAA
CGACGTGATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4695#0      ------------------GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCA 42
consensus_4695#1      CACGAGTCACGGTGGACATTTCCACGAGTCACGGTTGGAGCGACTACTCCTCAGAATGCA 60
                                           **  *   *  *  ** * ***** **************

consensus_4695#0      TACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGG 102
consensus_4695#1      TACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGG 120
                      ********************* ********************** ***************

consensus_4695#0      AGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGAT 162
consensus_4695#1      AGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGAT 180
                      ************************************************************

consensus_4695#0      TTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGA 222
consensus_4695#1      TTACCTATCCGTCGACCGTAGAC--GTCGACCATGAGTGCAGTGGAGATGACGAGAGAGA 238
                      ***********************  ***********************************

consensus_4695#0      AGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAG 282
consensus_4695#1      GGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAG 298
                       ******************************************* ***************

consensus_4695#0      AGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATG 342
consensus_4695#1      AGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATG 358
                      *************************************** ****** ******** ****

consensus_4695#0      CTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGA 402
consensus_4695#1      CTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGA 418
                      ************************************************************

consensus_4695#0      GAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAG 462
consensus_4695#1      GAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAG 478
                      *********** ************************************** *********

consensus_4695#0      AACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGG 522
consensus_4695#1      AACGACGTGATTTG---------------------------------------------- 492
                      **************                                              

consensus_4695#0      TGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTG 582
consensus_4695#1      ------------------------------------------------------------
                                                                                  

consensus_4695#0      TGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTG 642
consensus_4695#1      ------------------------------------------------------------
                                                                                  

consensus_4695#0      CCCATCTGCGTGAGGA 658
consensus_4695#1      ----------------