cluster # 4710

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Schistosoma mansoni
cluster # 4710 cluster # 4710 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4710#0 length = 300 sequences # 2

consensus_4710#1 length = 164 sequences # 1

consensusID : consensus_4710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 300
fasta sequence

                              [GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCACTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGAGCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA]

[+] EMBL CD092135             [GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCCACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCACTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTC                                                                                                          ]
[-] EMBL CD059767             [                                                                                                                              TCATAATCAATCTCCTTCTTCAATTCCTACTATTCCTTCTACCTTGACTTTCAACACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGAGCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA]




>consensus_4710#0
GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCC
ACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCA
CTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAA
CACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGA
GCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA

consensusID : consensus_4710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [GCACTGACTCAACACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGCGCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGACGTACGTACCCTAAGTCAAATCGGTCAGTGCA]

[-] EMBL CD086541             [GCACTGACTCAACACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGCGCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGACGTACGTACCCTAAGTCAAATCGGTCAGTGCA]




>consensus_4710#1
GCACTGACTCAACACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAA
CAATTCTAGTGCGCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACAT
TGGAGCCTTCGACGTACGTACCCTAAGTCAAATCGGTCAGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4710#0      GCATTCTCTTCACCTAGTTCAAATTTAGACAACTGGGTACTATCATTAGCAGCATCTTCC 60
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      ACGGTGTGGGCAACCGGGAAGTGATAACTGCCCTCATACTTCTAACAGCACTCAAGACCA 120
consensus_4710#1      ------------------------------------------------------------
                                                                                  

consensus_4710#0      CTGTATTCATAATCAATCTTCTTCTTCAATTACTACTATTCCTTCTACCTTGACTTTCAA 180
consensus_4710#1      ----------------------------------------------GCACTGACT--CAA 12
                                                                     *  *****  ***

consensus_4710#0      CACTAAACTTCCTCTTTCGGTTTCCTCCTCAAGTGTCACCATGGCCAACGATTTTAGTGA 240
consensus_4710#1      CACTAAACTTCCTCCTCCGGCTTCCTCCTCAAGTGTCACCATAGCCAACAATTCTAGTGC 72
                      ************** * *** ********************* ****** *** ***** 

consensus_4710#0      GCGAAAATCTGTCCCAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCAA 300
consensus_4710#1      GCGAAACGCTGTCCTAGGTCTACTAAAACCTCGCTCCAAACTACACATTGGAGCCTTCGA 132
                      ******  ****** ******************************************* *

consensus_4710#0      --------------------------------
consensus_4710#1      CGTACGTACCCTAAGTCAAATCGGTCAGTGCA 164