cluster # 4738

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Schistosoma mansoni
cluster # 4738 cluster # 4738 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4738#0 length = 667 sequences # 2

consensus_4738#1 length = 228 sequences # 1

consensusID : consensus_4738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACTACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACCGCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGATTTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGACATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACAAACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTTCTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCACCAACTTC]

[-] EMBL CD140520             [TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACTACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACCGCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGA                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD069026             [                                                                                                                                  CCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAGAGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATGGATTGATTAAAAAAAGAGAAAAAGAAGGAACAACTTTACCTCTTTTAATTGGTAACTATTCAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATTGTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGATTTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGACATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACAAACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTTCTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCACCAACTTC]




>consensus_4738#0
TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACT
ACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACC
GCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAG
AGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATG
GATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATT
CAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATT
GTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGAT
TTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGAC
ATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACA
AACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTT
CTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCAC
CAACTTC

consensusID : consensus_4738#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [GCCACATAAACATATATTTCTTACAAATTTCATAATACAATATAAACAAAATTGTATCATTTTTAAAATAGACATACATATGTATAGATAGATAGATACGTTCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAAGGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACTGGGATTA]

[+] EMBL AI976949             [GCCACATAAACATATATTTCTTACAAATTTCATAATACAATATAAACAAAATTGTATCATTTTTAAAATAGACATACATATGTATAGATAGATAGATACGTTCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAAGGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACTGGGATTA]




>consensus_4738#1
GCCACATAAACATATATTTCTTACAAATTTCATAATACAATATAAACAAAATTGTATCAT
TTTTAAAATAGACATACATATGTATAGATAGATAGATACGTTCAAAAATAAGCCCAGAAG
AAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAAGGTTTATCAATAGTAGATA
CGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACTGGGATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4738#0      TTTACTTCATTCTTTGTCCAATGCCCGACCATTATCATTACTATGACTATTACTATCACT 60
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      ACTACTACTACTACCACCACCGCTACTACCACTACTATCACCACCACCACTACCACCACC 120
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      GCTACTACCACCACTACTACTACTATGATTATTATTATTATCATCTGTTTTCATGACTAG 180
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      AGAAATAATAGTATTAGTATTAGTAATAACAATTAAAAGCAAAACCAATAGTCTTTCATG 240
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      GATTGATTAAAAAAAGAGATAGAGAAAGAACAACTTTACCTCTTTTAATTGGTAACTATT 300
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      CAATTTACCTCCCTTTGTATCTCTCTTTGCCCCTATCTCACTTTATTAAAGATAAGAATT 360
consensus_4738#1      ---GCCACATAAACATATATTTCT---TACAAATTTCATAATACAATATAAACAA-AATT 53
                            ** *     * *** ***   * *   * **  * *  * ** * * ** ****

consensus_4738#0      GTAGACTCTTTATTCTCTTGATGATTCTTTTTTGGTAATGATTGATGTATTTTTTGAGAT 420
consensus_4738#1      GTA------TCATTTTTAAAATAGACATACATATGTATAGATAGATAGAT------ACGT 101
                      ***      * *** *    **     *   *  ***  *** ***  **      *  *

consensus_4738#0      TTCTATGTATTATTGAATTGATTATAAAAAGTATTTTTTTGGATATTACTATGGGTTGAC 480
consensus_4738#1      TCAAAAATAAGCCCAGAAGAAGAAGACGAGGAAGAACTGGGATTATCATCAAAGGAAAAA 161
                      *   *  **       *   *  * *  * * *    *  *  *** *  *  **   * 

consensus_4738#0      ATCTTGGTACAGATAGATAGATAGATAGATCTGTATATGGAGTATTCTTCATTATTGACA 540
consensus_4738#1      GGTTTATCAATAGTAGATACGTTCAAAAAGAAGCAAAAAAAAAGTTGGTGAAAAAGAACT 221
                         **   *    ******  *  * * *   * * *   *   **  * *  *   ** 

consensus_4738#0      AACCCTTTTCCTTTGATGATAATCCTAGTTCTTCTTCGTCTTCTTCTTCTTTGGTTATTT 600
consensus_4738#1      GGGATTA----------------------------------------------------- 228
                           *                                                      

consensus_4738#0      CTGAACGTATCTACTATTGATAAACCTTTTTCTTTGATGATAATCCCAGTTCTTCTTCAC 660
consensus_4738#1      ------------------------------------------------------------
                                                                                  

consensus_4738#0      CAACTTC 667
consensus_4738#1      -------