cluster # 4767

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Schistosoma mansoni
cluster # 4767 cluster # 4767 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4767#0 length = 751 sequences # 2

consensus_4767#1 length = 397 sequences # 1

consensusID : consensus_4767#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 751
fasta sequence

                              [TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTCTGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCTGATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTTCTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCACTGAATCAAGAAATGGTGTGCTAATGCTACTGTCTCTGATAACCCAAATAATTTGACAACCAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATC-AAAGTTNCGATCATATTGCTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACACGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA]

[+] EMBL CD146857             [TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTCTGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCTGATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTTCTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCACTGAATCAAGAAATGGTGTGCTAATGCTACTGTCTCTGATAACCCAAATAATTTGACAACCAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATC AAAGTTNCGATC                                                                                                                  ]
[-] EMBL CD154987             [                                                                                                                                                                                                                                                                                                          CCAGAGACTTCATGTGCAATCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACGGGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGAAGGATCTAGTTTTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGAACTACCAGATTTCTCCTC AACATCAAAAGTTTCGATCATATTGCTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACACGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA]




>consensus_4767#0
TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTC
TGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCT
GATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTT
CTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCAC
TGAATCAAGAAATGGTGTGCTAATGCTACTGTCTCTGATAACCCAAATAATTTGACAACC
AGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGACG
GGTGCCCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAAC
ATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTT
ATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACAGTATGACTGGGAGGATC
TAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGCCATGTTTCTGACCATGA
ACTACCAGATTTCTNCTCAAACATCAAAGTTNCGATCATATTGCTTATTCGACGTAGATT
GACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACACGTTTAGATGCATAGTT
TAAACGATCTGATGATGACTGGAGAGCCCCA

consensusID : consensus_4767#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [TATAATTTATATCCCTTTGACAACTTTTATCCATATGTTGATGTTTACTCTGAGACTCGACCAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGTCAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAACAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCATGATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC]

[-] EMBL CD084321             [TATAATTTATATCCCTTTGACAACTTTTATCCATATGTTGATGTTTACTCTGAGACTCGACCAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGTCAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAACAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCATGATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC]




>consensus_4767#1
TATAATTTATATCCCTTTGACAACTTTTATCCATATGTTGATGTTTACTCTGAGACTCGA
CCAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGTCAAATA
AATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAACAGCTA
CCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCATGATAAT
TGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTATCCCTT
AGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTTGTTAGA
CATAATTTGTTATAAAAAATCGGATTATTATAACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4767#0      TTTACTGATATCCAATTTGTACGGCTGCTGTTGATCAGGAACAAGCATAAGGTGATCTTC 60
consensus_4767#1      ------------------------------------------------------------
                                                                                  

consensus_4767#0      TGCAGTTTTTGGGATATCCTCTGATTGGCCATCCTCAGCCACAATATAACGCATGCGTCT 120
consensus_4767#1      ---------------------------------------------------------TAT 3
                                                                               * *

consensus_4767#0      GATTTGTGTATCCTCTGGGATTTTATCTCCAGATGGTTCGGAACTGATTTTGGTTTTCTT 180
consensus_4767#1      AATTTATAT-CCCTTTGACAACTTTTATCCATATG--TTGATGTTTACTCTGAGA----- 55
                       **** * *  *** **  *  ** * **** ***  * *    * * * **        

consensus_4767#0      CTCGACATAATCGTTTTGCTTTGACATTTCTCTTGCTTCTAATAAAAATGTGGCAACCAC 240
consensus_4767#1      CTCGAC-CAGTTGGCTAATTTCTGAAATCCATTTAGTTGAGACCTGGGGAAGTACTCCGT 114
                      ******  * * *  *   **    * * *  **  **   *         *    **  

consensus_4767#0      TGAATCAAGAAATGGTGTGCTAATGCT-ACTGTCTCTGATAACCCAAATAATTTGACAAC 299
consensus_4767#1      CAAATAAATTATCAGTTTAGTTATCCCGATCAAATTCAATAATCGTATCAATTTATCTAA 174
                        *** **  *   ** *  * ** *  *     *   **** *  *  *****  * * 

consensus_4767#0      CAGAGACTTCATGTGCAACCTCCGTTGCTATACCTCCGTTCCCAACTAACACCATACGAC 359
consensus_4767#1      CAGCTACCACAAAAACTACTTCCTTATTTTGTTGACTGTAACAGATGATGATCTTGCCAT 234
                      ***  **  **    * ** *** *   *      * **  *  *  *  * * * * * 

consensus_4767#0      GGGTGC----------------CCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTA 403
consensus_4767#1      GATAATTGAAATGAAAATTAAACCAGTAGACGGTGTTGAAATGTTTTGATACTCTCTGTA 294
                      *                     **************************************

consensus_4767#0      TCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTT 463
consensus_4767#1      TCCCTTAGACCAATAACATATGGATGCTTCGGATCAATAAGCCGCGGAACACCGCCAGTT 354
                      ************************************************************

consensus_4767#0      GTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCACGTTGTTGTAAATAAACA 523
consensus_4767#1      GTTAGACATAATTTGTTATAAAAAATCGGATTATTATAACCAC----------------- 397
                      *******************************************                 

consensus_4767#0      GTATGACTGGGAGGATCTAGTTNTATCATTGTATCACAGATTACGGTCAATGTATCAGGC 583
consensus_4767#1      ------------------------------------------------------------
                                                                                  

consensus_4767#0      CATGTTTCTGACCATGAACTACCAGATTTCTNCTCAAACATCAAAGTTNCGATCATATTG 643
consensus_4767#1      ------------------------------------------------------------
                                                                                  

consensus_4767#0      CTTATTCGACGTAGATTGACTGTAGTTTTCACAGTTTTAGAAGCCGATATCAGTGCTACA 703
consensus_4767#1      ------------------------------------------------------------
                                                                                  

consensus_4767#0      CGTTTAGATGCATAGTTTAAACGATCTGATGATGACTGGAGAGCCCCA 751
consensus_4767#1      ------------------------------------------------