cluster # 478

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Schistosoma mansoni
cluster # 478 cluster # 478 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_478#0 length = 626 sequences # 1

consensus_478#1 length = 410 sequences # 1

consensusID : consensus_478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGAGATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAAAAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAAAAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAATTACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTACAACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAGATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACCGTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAATGATAAGTACAATAAACATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAATGTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAAACAAAGGAGTGGAAGGAGAGTGAGTCG]

[+] EMBL CD064553             [TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGAGATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAAAAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAAAAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAATTACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTACAACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAGATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACCGTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAATGATAAGTACAATAAACATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAATGTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAAACAAAGGAGTGGAAGGAGAGTGAGTCG]




>consensus_478#0
TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGA
GATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAA
AAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAA
AAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAAT
TACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTAC
AACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAG
ATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACC
GTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAATGATAAGTACAATAAACA
TTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAATG
TGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAAA
CAAAGGAGTGGAAGGAGAGTGAGTCG

consensusID : consensus_478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CAATTACAAGTCGCGCAGGAATATTAACCTGCTTGCCATCGATTACGCCTTTCGGCCTCACCTTAAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGGCGAGGAGGCTTTTCACCCCCTTTATCGGTACTTACGTGAGCATTCCCACTTCTGATATATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACACATAAGAGTGAATCCGCGGCTTCCGTGCCTGTGTTGAGCCCCGTTACATCTTCCGCGCACGCCGACTCGACTAGTGAGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAACCCAACATCCTACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAACTTTGG]

[+] EMBL CD086932             [CAATTACAAGTCGCGCAGGAATATTAACCTGCTTGCCATCGATTACGCCTTTCGGCCTCACCTTAAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGGCGAGGAGGCTTTTCACCCCCTTTATCGGTACTTACGTGAGCATTCCCACTTCTGATATATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACACATAAGAGTGAATCCGCGGCTTCCGTGCCTGTGTTGAGCCCCGTTACATCTTCCGCGCACGCCGACTCGACTAGTGAGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAACCCAACATCCTACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAACTTTGG]




>consensus_478#1
CAATTACAAGTCGCGCAGGAATATTAACCTGCTTGCCATCGATTACGCCTTTCGGCCTCA
CCTTAAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTTGGTCTTCCGG
CGAGGAGGCTTTTCACCCCCTTTATCGGTACTTACGTGAGCATTCCCACTTCTGATATAT
CCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACACA
TAAGAGTGAATCCGCGGCTTCCGTGCCTGTGTTGAGCCCCGTTACATCTTCCGCGCACGC
CGACTCGACTAGTGAGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAACCCAACATC
CTACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAACTTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_478#0      TTACATTAATGCAACGTAATATACGTAAATATTTAGTATTACGTAATTGGCCATGGTGGA 60
consensus_478#1      ------------------------------------------------------------
                                                                                 

consensus_478#0      GATTATATACAAAAGTGAAACCAATGTTAAATATAGCACGTCAAGAAGAAGAAATGAAAA 120
consensus_478#1      ---------------------------------------------------CAATTACAA 9
                                                                         *** * **

consensus_478#0      AAGCCGCTGAAGAATTAGCCAAATTAAAAGAAGAATATGAAAAATTAGAAAAATTAAAAA 180
consensus_478#1      GTCGCGCAGGAATATTAACCTGCTTGCCATC-GATTACGC----CTTTCGGCCTCACCTT 64
                         *** * *  **** **   **   *   ** ** *      *       * *    

consensus_478#0      AAGAATTAGAAGAACAAAATGTCACTGTATTACAACAAAAAAATGATTTATTTTTACAAT 240
consensus_478#1      AAGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCC---TTGGTCTTCCGGC 121
                     ***  *      * *        * *    *   ***  **      **  * ** *   

consensus_478#0      TACAAACTGAACAAGATAGTTTAGCTGATGCTGAAGAGAAAATATCCAAGCTTGTGCTAC 300
consensus_478#1      GAGGAGGCTTTTCACCCCCTTTATC-GGTACTTACGTGAGCATTCCCA--CTTCTGATAT 178
                      *  *        *     **** * * * ** * * **  **  ***  *** ** ** 

consensus_478#0      AACGTGGTGATATGGAACAACGTATTAAAGAATTAGAAGAACGTTTAGCTGATGAAGAAG 360
consensus_478#1      ATCCAGCATACCTCTCGATACACCTTCGCAAACTTACATAACGCTCCCCTACCACTCACA 238
                     * *  *   *  *      **   **    ** *   * **** *   **       *  

consensus_478#0      ATCAAGAGCAAACGATATGGAAACTGTTGCGTTTAAACAAATCCACAACTGTGGATAACC 420
consensus_478#1      CATAAGAGTGAAT----CCGCGGCTTCCGTGCCTGTGTTGAGCC-CCGTTACATCTTCCG 293
                        *****  **       *   **   * *  *      * ** *   *     *  * 

consensus_478#0      GTTACAGTAATTAAAGTACAGTGATTATAAAGACAAATACAA-TGATAAGTACAATAAAC 479
consensus_478#1      CGCACGCCGACTCGACTAGTG-AGCTATAACGCTGTCTCTAAATGATGAGCTGCTTTAAC 352
                        **    * *  * **  *    ***** *     *  ** **** **     * ***

consensus_478#0      ATTATAAATATATGTGAACGTTTCCGAATGTTACAGTACAACTTGCGTTACAATGTAAAT 539
consensus_478#1      ----CCAACATCCT---ACCTGTCTGAGCCTTACCACATGGTTGCCCACTTAACCCGAAC 405
                           ** **      ** * ** **   ****   *    *  *     **    ** 

consensus_478#0      GTGAAAATTGTTAAGGATACAACTGCTTATTGAATATAAATAAGTAGTTTACAACAATAA 599
consensus_478#1      TTTGG------------------------------------------------------- 410
                      *                                                          

consensus_478#0      ACAAAGGAGTGGAAGGAGAGTGAGTCG 626
consensus_478#1      ---------------------------