cluster # 4804

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4804 cluster # 4804 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4804#0 length = 517 sequences # 2

consensus_4804#1 length = 318 sequences # 1

consensusID : consensus_4804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 517
fasta sequence

                              [CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTACTGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTTGTATTTCAACATTTCTACATTCAACTTGTGTAACGACTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG]

[-] EMBL CD068127             [CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTACTGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTTGTATTTCAACATTTCTACATTCAACTTGTGTAACGACT                                                                                                                                                                                   ]
[+] EMBL CD126142             [                                                                                                 gctgCTCCAATCGACTGGGAAACAGTTAC TGTAACTTTTTATTTATTAATTGTGTAGTCG TGGTGTGTGCTGAACGCTTCCTTCTTTCG TGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACA TTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG]




>consensus_4804#0
CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTAC
TGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAAC
AGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCC
TTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATAC
GTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTT
GTATTTCAACATTTCTACATTCAACTTGTGTAACGACTTGAACACCTTGAGAGAAACAGG
GATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAA
GAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACG
TGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG

consensusID : consensus_4804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG]

[+] EMBL CD125983             [ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG]




>consensus_4804#1
ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGC
ATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACA
TTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGGGATTTATTGACCCAACATG
ATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAAGAACAGCTTGACAACCAAC
ATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACGTGGTTTTTGGTAGTACAGT
AGGGACTTGAGCCATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4804#0      CCCAGACTCTCAGTCTGTATGTGTCTGTGATGAGTGATAAATTGTTTGCATCGTGGGTAC 60
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      TGTTACAACTGGTATTGATTCGTATGTTTGCGCGGCTGCCTCTCGAATCGACTGGGAAAC 120
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      AGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCC 180
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      TTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATAC 240
consensus_4804#1      ------------------ATGTCTGTTACCTGTTTGAATTTCTTGCTGACGGCATAATAC 42
                                        * **    **   ****** **********************

consensus_4804#0      GTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACACTT 300
consensus_4804#1      GTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACA-TT 101
                      ********************************************************* **

consensus_4804#0      GTATTTCAACATTTCTACATTCAACTTGTGTAACGACTTGAACACCTTGAGAGAAACAGG 360
consensus_4804#1      GTATTTCAACATTTCTACATTCAACTTGTGTACCAGCTTGAACACCTTGAGAGAAACAGG 161
                      ******************************** *  ************************

consensus_4804#0      GATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAA 420
consensus_4804#1      GATTTATTGACCCAACATGATCAACAGCAACATCGTTCATTAATAAATCTTCCGAAATAA 221
                      ************************************************************

consensus_4804#0      GAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACG 480
consensus_4804#1      GAACAGCTTGACAACCAACATTAAGAGATAGAGTACCAGATTGAGTCACAACATCGAACG 281
                      ************************************************************

consensus_4804#0      TGGTTTTTGGTAGTACAGTAGGGACTCGAGCCATCGG 517
consensus_4804#1      TGGTTTTTGGTAGTACAGTAGGGACTTGAGCCATCGG 318
                      ************************** **********