cluster # 4828

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Schistosoma mansoni
cluster # 4828 cluster # 4828 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4828#0 length = 464 sequences # 2

consensus_4828#1 length = 162 sequences # 1

consensusID : consensus_4828#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 464
fasta sequence

                              [ATCCATTTGTATACTGTGATGAGTGTCTAGTTCCTCTGGGTACTTGACTGTACAATGGCTGTTCATACTGACCTATCCCAAAGTATCCAGTGTTGATACGTTTATCCAATTGATATCGAGGCGGATTCATGAGCGGACTATAAAATCTTGGATCTTGTGGTACCGGACTAGGATACAAATATTGATTTTGTCTCATATCACCCGAATAAAGTGATTGGCCTGCACTTTCAACTACTGCGACATCTTGCGGACTCCCAAGAATAGCGCCATCACTCCCGATAACTCCATCATCCGGGCTACCAACAACAGAAGAGTCTGAGTACTGTGGGTTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTCACCAGAAACTGTGTTTTCAGCAGATCCTTGGATTTGGTGGTCACTAGGATACGTGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATAT]

[+] EMBL BG930417             [ATCCATTTGTATACTGTGATGAGTGTCTAGTTCCTCTGGGTACTTGACTGTACAATGGCTGTTCATACTGACCTATCCCAAAGTATCCAGTGTTGATACGTTTATCCAATTGATATCGAGGCGGATTCATGAGCGGACTATAAAATCTTGGATCTTGTGGTACCGGACTAGGATACAAATATTGATTTTGTCTCATATCACCCGAATAAAGTGATTGGCCTGCACTTTCAACTACTGCGACATCTTGCGGACTCCCAAGAATAGCGCCATCACTCCCGATAACTCCATCATCCGGGCTACCAACAACAGAAGAGTCTGAGTACTGTGGGTTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTCACCAGAAACTGTGTTTTCAGCAGATCCTTGGATTTGGTG                                                          ]
[-] EMBL BG930317             [                                                                                                                              TCATGAGCGGACTATAAAATCTTGGATCTTGTGGTACCGGACTAGGATACAAATATTGATTTTGTCTCATATCACCCGAATAAAGTGATTGGCCTGCACCTTCAACTACTGCGACATCTTGCGGACTCCCAAGAATAGCGCCATCACTCCCGATAACTCCATCATCCGGGCTACCAACAACAGAAGAGTCTGAGTACTGTGGGTTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTCACCAGAAACTGTGTTTTCAGCAGTTCCTTGGATTTGTTGGTCACTAGGATACGTGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATAT]




>consensus_4828#0
ATCCATTTGTATACTGTGATGAGTGTCTAGTTCCTCTGGGTACTTGACTGTACAATGGCT
GTTCATACTGACCTATCCCAAAGTATCCAGTGTTGATACGTTTATCCAATTGATATCGAG
GCGGATTCATGAGCGGACTATAAAATCTTGGATCTTGTGGTACCGGACTAGGATACAAAT
ATTGATTTTGTCTCATATCACCCGAATAAAGTGATTGGCCTGCACTTTCAACTACTGCGA
CATCTTGCGGACTCCCAAGAATAGCGCCATCACTCCCGATAACTCCATCATCCGGGCTAC
CAACAACAGAAGAGTCTGAGTACTGTGGGTTCTGAACAATTGTCCTAGGCGTGATTTCCA
TTTCGTCACCAGAAACTGTGTTTTCAGCAGATCCTTGGATTTGGTGGTCACTAGGATACG
TGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATAT

consensusID : consensus_4828#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [TGGTATTGTGATAGACGGGGGGTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTTACCAAAACTGTGTTTTCAGCAGTTCCTTGGATTTGTTGGTCACTATGATACGTGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATATGCTGATT]

[+] EMBL BG930262             [TGGTATTGTGATAGACGGGGGGTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTTACCAAAACTGTGTTTTCAGCAGTTCCTTGGATTTGTTGGTCACTATGATACGTGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATATGCTGATT]




>consensus_4828#1
TGGTATTGTGATAGACGGGGGGTCTGAACAATTGTCCTAGGCGTGATTTCCATTTCGTTA
CCAAAACTGTGTTTTCAGCAGTTCCTTGGATTTGTTGGTCACTATGATACGTGACAGTTG
TGTGGCTTTGTACAGGTTGTTGTTCGACTAAATATGCTGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4828#0      ATCCATTTGTATACTGTGATGAGTGTCTAGTTCCTCTGGGTACTTGACTGTACAATGGCT 60
consensus_4828#1      ------------------------------------------------------------
                                                                                  

consensus_4828#0      GTTCATACTGACCTATCCCAAAGTATCCAGTGTTGATACGTTTATCCAATTGATATCGAG 120
consensus_4828#1      ------------------------------------------------------------
                                                                                  

consensus_4828#0      GCGGATTCATGAGCGGACTATAAAATCTTGGATCTTGTGGTACCGGACTAGGATACAAAT 180
consensus_4828#1      ------------------------------------------------------------
                                                                                  

consensus_4828#0      ATTGATTTTGTCTCATATCACCCGAATAAAGTGATTGGCCTGCACTTTCAACTACTGCGA 240
consensus_4828#1      ------------------------------------------------------------
                                                                                  

consensus_4828#0      CATCTTGCGGACTCCCAAGAATAGCGCCATCACTCCCGATAACTCCATCATCCGGGCTAC 300
consensus_4828#1      ------------------------------------------------------------
                                                                                  

consensus_4828#0      CAACAACAGAAGAGTCTGAGTACTGTGGGTTCTGAACAATTGTCCTAGGCGTGATTTCCA 360
consensus_4828#1      --------TGGTATTGTGATAGACGGGGGGTCTGAACAATTGTCCTAGGCGTGATTTCCA 52
                                  * * ***     * *** ******************************

consensus_4828#0      TTTCGTCACCAGAAACTGTGTTTTCAGCAGATCCTTGGATTTGGTGGTCACTAGGATACG 420
consensus_4828#1      TTTCGTTACCA-AAACTGTGTTTTCAGCAGTTCCTTGGATTTGTTGGTCACTATGATACG 111
                      ****** **** ****************** ************ ********* ******

consensus_4828#0      TGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATAT------- 464
consensus_4828#1      TGACAGTTGTGTGGCTTTGTACAGGTTGTTGTTCGACTAAATATGCTGATT 162
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