cluster # 4846

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Schistosoma mansoni
cluster # 4846 cluster # 4846 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4846#0 length = 872 sequences # 2

consensus_4846#1 length = 576 sequences # 1

consensusID : consensus_4846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 872
fasta sequence

                              [GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGTTGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTATATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAANNGTATACAGCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGCAGAAACCACTAANGAAAANAAGANAGATTCATCANNACATNACAGGNNTGCCAAAGCCCAACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGTTNACTATTTTAGCACAAATTTGTAATACTACTAGATCATACACTGGATTTTCATATAATCTTTTGGGATTANTTATTNATCTAACTAGCATCAG]

[+] EMBL CD080449             [GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGTTGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTATATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAANNGTATACAGCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGCAGAAACCACTAANGAAAANAAGANAGATTCATCANNACATNACAGGNNTGCCAAAGCCCAACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGTTNACTATTTTAGCACAAATTTGTAATACTACTAGATCATACACTGGATTTTCATATAATCTTTTGGGATTANTTATTNATCTAACTAGCATCAG]
[-] EMBL CD069639             [                                                                                    TTTTATTCCGGATAAAGAAAAGGATTTTTACCTGATATATTTACTATTATCGTCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCACATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGCTGCCTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGATTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCC        AGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGA                                                                                                                                                                                                                                                                                                                                      ]




>consensus_4846#0
GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGT
TGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTAT
ATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCAC
ATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGC
TGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGA
TTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGA
CTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGA
TTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACG
TGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTT
GAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAG
ACAACAANNGTATACAGCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGCA
GAAACCACTAANGAAAANAAGANAGATTCATCANNACATNACAGGNNTGCCAAAGCCCAA
CGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGTTN
ACTATTTTAGCACAAATTTGTAATACTACTAGATCATACACTGGATTTTCATATAATCTT
TTGGGATTANTTATTNATCTAACTAGCATCAG

consensusID : consensus_4846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAAGTAATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGCAGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCAAACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGTTTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCATATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA]

[-] EMBL CD074361             [GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAAGTAATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGCAGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCAAACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGTTTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCATATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA]




>consensus_4846#1
GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGACTTTCCAGATGTTGAT
CTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGATTCTGCAAAAGCTTAT
ATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACGTGCTATTACATTTGTT
ACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTTGAACGAAAGAATTCCT
CAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAGACAACAAGTAATACAA
GCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGCAGAAACAACTAAAGAAA
AAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCAAACGATCACATCAAGGT
AAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGTTTACTATTTTTAGCACA
AATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCATATAATTCTTTTTTGGAA
TATATTTATTTAATCTAACTAAGCAATACAAGCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4846#0      GCGAAAGGTATGCACCAAGTCACCAGTTATACTTGAAGTCAGTTCAAAATATAGCAAAGT 60
consensus_4846#1      ------------------------------------------------------------
                                                                                  

consensus_4846#0      TGACAAGTTAGATCATGCATTTGTTTTTATTCCGGATAAAGAAAAGGATTTTTACCTTAT 120
consensus_4846#1      ------------------------------------------------------------
                                                                                  

consensus_4846#0      ATATTTACTATTATCATCTAAGAGCGCAGACAAAAGCCGATCGATTATATTTACAAGCAC 180
consensus_4846#1      ------------------------------------------------------------
                                                                                  

consensus_4846#0      ATGGAGAGAATCATTTCGTATAGTGGCAATGCTTAAAAGTTTGGCCGATGTAATTAGTGC 240
consensus_4846#1      ------------------------------------------------------------
                                                                                  

consensus_4846#0      TGCTTCTGCCCCACTTAATGGTGTTATGCAGCAAGATAAACGTCAGTCATCTTTATTCGA 300
consensus_4846#1      ------------------------------------------------------------
                                                                                  

consensus_4846#0      TTTCCGTACAGGTCGTGTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGA 360
consensus_4846#1      ----------------GTTTCAATACTTGTAGCTACTGATCTGGCCTCCAGGGGATTAGA 44
                                      ********************************************

consensus_4846#0      CTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGA 420
consensus_4846#1      CTTTCCAGATGTTGATCTTGTTATTAATTACGATGTCCCACGTCGGCCATCGTGGTCTGA 104
                      ************************************************************

consensus_4846#0      TTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACG 480
consensus_4846#1      TTCTGCAAAAGCTTATATACATCGAGTAGGAAGAACTGCTCGTGCTGGACGACACGGACG 164
                      ************************************************************

consensus_4846#0      TGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTT 540
consensus_4846#1      TGCTATTACATTTGTTACTCCTTATTCAGTTACACGTTTGAAAGCTATAGAATCAGCTTT 224
                      ************************************************************

consensus_4846#0      GAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAG 600
consensus_4846#1      GAACGAAAGAATTCCTCAGCTACCTTGGCCCGGAACAGATTGCTTGGATTCACAGTTAAG 284
                      ************************************************************

consensus_4846#0      ACAACAANNGTATACA-GCTGANCAAGAAGCTCGAGCGAACCTACGTATCANAGAANAGC 659
consensus_4846#1      ACAACAAGTA-ATACAAGCTGACAAAGAAGCTCGAGCGAACCTACGTATCAAAGAAAAGC 343
                      *******    ***** *****  *************************** **** ***

consensus_4846#0      AGAAACCACTAANGAAAANAAGANA-GATTCATCANNACATNACAGGNNTGCCAAAGCCC 718
consensus_4846#1      AGAAACAACTAAAGAAAAAAAGAAAAGATTCATCAAACAATAACAGGTTGCCAAAAGCCA 403
                      ****** ***** ***** **** * *********    ** *****    * ****** 

consensus_4846#0      AACGATCACATCAAGGTAAAGAAGTGGATCCANNGAGAGACAACAGTGAATCAGAATAGT 778
consensus_4846#1      AACGATCACATCAAGGTAAAGAAGTGGATCCAGAAGAGACAAACAGTGAATCAGAATAGT 463
                      ********************************         *******************

consensus_4846#0      TNACTATTTT-AGCACAAATTT-GTAA-TACTACTAGATCAT-ACACTGGA--TTTTCAT 832
consensus_4846#1      TTACTATTTTTAGCACAAATTTTGTAAATACTACTAGATCATCACACTTGGATTTTTCAT 523
                      * ******** *********** **** ************** ***** *   *******

consensus_4846#0      ATAATC---TTTTGGGAT-TANTTATTNA-TCTAACTA-GCATCAG------- 872
consensus_4846#1      ATAATTCTTTTTTGGAATATATTTATTTAATCTAACTAAGCAATACAAGCTGA 576
                      *****    ****** ** ** ***** * ******** ***  *