cluster # 4901

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Schistosoma mansoni
cluster # 4901 cluster # 4901 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4901#0 length = 892 sequences # 2

consensus_4901#1 length = 194 sequences # 1

consensusID : consensus_4901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 892
fasta sequence

                              [TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACTGCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTGACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGTAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCAATTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTC-AAATCATAAAATCTGAACTTCAAGGTGGTTCGGACAGCCAGTGGCTTCATAGGCTGGCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAACATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGTATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGTAAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG]

[+] EMBL CD161093             [TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACTGCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTGACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGTAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCAATTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTC AAATCATAAAATCTGAACTTCAAGGTGG                                                                                                                                                                                                                                                                      ]
[-] EMBL CD161350             [                                                                                                                                                                                                                                                                                           TAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTCAAAATCATAAAATCTGAACTTCAATGTGGTTCGGACAGCCAGTGGCTTCATAGGCTGGCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAACATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGTATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGTAAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG]




>consensus_4901#0
TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACT
GCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTG
ACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGG
TAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCA
ATTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTGCC
TACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCT
TAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAAC
ACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACT
TTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCT
TTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAAT
TCAAATCATAAAATCTGAACTTCAAGGTGGTTCGGACAGCCAGTGGCTTCATAGGCTGGC
GCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAACA
TAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGTAT
ATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGTAA
ATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG

consensusID : consensus_4901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGGTTTTATTGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACGAACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACGTGTTTTGATTCATATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT]

[+] EMBL CD192305             [GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGGTTTTATTGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACGAACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACGTGTTTTGATTCATATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT]




>consensus_4901#1
GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGGTTTTATTGCTTGAG
AATATGGTAGGCGTTAATGAAGTGGACGACGAACTACAAGAGGAAGTAATGGAGGAGTGT
GGAAATTACGGTTCTGTCCTACGTGTTTTGATTCATATAATGACAAGTCAGGATGTTCGT
ATCTTTATTCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4901#0      TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACT 60
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      GCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTG 120
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      ACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGG 180
consensus_4901#1      ---------------GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGG 45
                                     *********************************************

consensus_4901#0      TAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCA 240
consensus_4901#1      G---------TTTTAT-----TGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACG 91
                                ******     * **     ****  **   *   ** *  *** *  * 

consensus_4901#0      A--TTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTG 298
consensus_4901#1      AACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACG--TGTTT- 148
                      *  * *** *  ** *     * * ***   *   * *      **  *  *  ***** 

consensus_4901#0      CCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATG 358
consensus_4901#1      --TGATTCA----TATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT-------- 194
                        *  ** *    * ***      * **   *  * *    ** * * *  *        

consensus_4901#0      CTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTA 418
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      ACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGA 478
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      CTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGT 538
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      CTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAA 598
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      ATTCAAATCATAAAATCTGAACTTCAAGGTGGTTCGGACAGCCAGTGGCTTCATAGGCTG 658
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      GCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAA 718
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      CATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGT 778
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      ATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGT 838
consensus_4901#1      ------------------------------------------------------------
                                                                                  

consensus_4901#0      AAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG 892
consensus_4901#1      ------------------------------------------------------