cluster # 4912

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Schistosoma mansoni
cluster # 4912 cluster # 4912 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4912#0 length = 576 sequences # 2

consensus_4912#1 length = 288 sequences # 1

consensusID : consensus_4912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 576
fasta sequence

                              [CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAATCACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGAAATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGGATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAATGGATACATTTATA-TAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAGTGCATATACAGTATATTTCTGCATCCAATCATTTAAT]

[+] EMBL CD149661             [CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAATCACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGAAATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGGATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAATGGATACATTTATA TAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTT                                                                                           ]
[-] EMBL AI820444             [                                                                                                                                                                                                                                                                                                                                            ACCAAACAAATGAATCAAAATTATCTGAACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGCCAATGGATACATTTATATTAAACATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCTCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAGTGCATATACAGTATATTTCTGCATCCAATCATTTAAT]




>consensus_4912#0
CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAAT
CACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGA
AATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGG
ATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGA
GAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGA
TACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGA
ACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAATGGATACATTTATATAAACA
TATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATCT
CTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAGT
GCATATACAGTATATTTCTGCATCCAATCATTTAAT

consensusID : consensus_4912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TAATTTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATCTTTTCTTTATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGAACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAACATATCAGA]

[+] EMBL CD141200             [TAATTTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATCTTTTCTTTATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGAACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAACATATCAGA]




>consensus_4912#1
TAATTTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATCTTTTCTTTATCAGTAATA
GATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGAGAAAACTTGGACGACTCAAA
GAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGATACGTGAAATGGAACAAATC
GATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGAACAATTGATTTCTTTGGTCA
GAAATTAATCAGATTGGCAAATGGATACTTTTATATAAACATATCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4912#0      CCACTGAGAAACTGCGTTTAGCACATTTAATGACATATGGTGAAGAGCCTACATGGAAAT 60
consensus_4912#1      ------------------------------------------------------------
                                                                                  

consensus_4912#0      CACTGCAAAATGATCAAATCAAAGATGGAAGGTTAGAATATTTAGGTCGTCGTATACTGA 120
consensus_4912#1      ------------------------------------------------------------
                                                                                  

consensus_4912#0      AATATCCCAAAGTCAATGGTGATGATGATTATGATGATAAGCAAATTGAAACCAATAAGG 180
consensus_4912#1      ----------------TAAT--TTTTAACTGCCTAAATGGTTTATTTTTCATTGTTGATC 42
                                      *  *  *  * * *      **     * **   *    * *  

consensus_4912#0      ATAGATTTGAAGAACTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGA 240
consensus_4912#1      TTTTCTTT--ATCAGTAATAGATGAAATTAATGAAAGAAGTGAATTTTTGACACAAATGA 100
                       *   ***  *  * *********************************************

consensus_4912#0      GAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGA 300
consensus_4912#1      GAAAACTTGGACGACTCAAAGAATATCAAACAACTGTTGAAACAGAAATATCTCAATTGA 160
                      ************************************************************

consensus_4912#0      TACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAATGATCTGA 360
consensus_4912#1      TACGTGAAATGGAACAAATCGATTTGAAACGAACCAAACAAATGAATCAAAGTGATCTGA 220
                      *************************************************** ********

consensus_4912#0      ACAATTGATTTCTTTGGTCAGAAATCAATCAGATTGGCAA-TGGATACATTTATATAAAC 419
consensus_4912#1      ACAATTGATTTCTTTGGTCAGAAATTAATCAGATTGGCAAATGGATACTTTTATATAAAC 280
                      ************************* ************** ******* ***********

consensus_4912#0      ATATCAGAACCCAAAATGTAAAAAATAATTATCCATAATTTTGTTTTCCTCTTCTCGATC 479
consensus_4912#1      ATATCAGA---------------------------------------------------- 288
                      ********                                                    

consensus_4912#0      TCTCTTTCTTTCTCCCTCTCACTGTCTCCCTGTCTCTATCCCGAAAACCCACTGTATTAG 539
consensus_4912#1      ------------------------------------------------------------
                                                                                  

consensus_4912#0      TGCATATACAGTATATTTCTGCATCCAATCATTTAAT 576
consensus_4912#1      -------------------------------------