cluster # 4932

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Schistosoma mansoni
cluster # 4932 cluster # 4932 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4932#0 length = 926 sequences # 2

consensus_4932#1 length = 366 sequences # 1

consensusID : consensus_4932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 926
fasta sequence

                              [TTTGTTGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTATTACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACTGATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTAATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGTAATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTGAAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTTACCATTTATACATTTAATTTGGAAGCAGTCGATTTTACATAAACAAAAAGACACAAATATCGATGTATGCCCTGGTATATATATTTCAATGTCAACGAACCGTAGATAAATATGCCCTTTTTTTTATTTTACTTTCGTTGAATCTCATCATTTTTTGTTTGTTGTGATTTTGCATAATGATTTAGCTATTTTTCTCTTGCCCAGTTTCTTTCATTTTCATACTTCAACATGAAATAATTNTGAAATATTNTATGCTGNGTTATTATTTGATCTTTTTTCTGGATTGTCTTCAGAGGACTGTTGCCATCCTCTCTCTCCCTCCCCGCTCGAATGATATAACTACTTGTTTTCAATTAAGTGTATGCGTAAAATGAACTATAACGAATCACTTTCTCTCTGATTGTTTTTTTATCGTGACCACTGCCTTGCGTGTTCCAATCTTTTCAGTGCCGTTTCTGATGCCTCTCTTTTCTATACTTTGCTTTGTTTCTGTATCCCTGTCTCAACACTGCTTACTTTGTGCTGTATATGTGCGTGTGTGTCTTTTCTCGTCTAGCTTTGTCGTTTCTTGG]

[+] EMBL CD078256             [TTTGTTGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTATTACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACTGATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTAATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGTAATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTGAAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTTACCATTTATACATTTAATTTGGAAGCAGTCGATTTTACATAAACAAAAAGACACAAATATCGATGTATGCCCTGGTATATATATTTCAATGTCAACGAACCGTAGATAAATATGCCCTTTTTTTTATTTTACTTTCGTTGAATCTCATCATTTTTTGTTTGTTGTGATTTTGCATAATGATTTAGCTATTTTTCTCTTGCCCAGTTTCTTTCATTTTCATACTTCAACATGAAATAATTNTGAAATATTNTATGCTGNGTTA                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD122395             [                                                                                                                                                                                                                                                                                                                                                                                                                AAAGACACAAATATCGATGTATGCCCTGGTATATATATTTCAATGTCAACGAACCGTAGATAAATATGCCCTTTTTTTTATTTTACTTTCGTTGAATCTCATCATTTTTTGTTTGTTGTGATTTTGCATAATGATTTAGCTATTTTTCTCTTGCCCAGTTTCTTTCATTTTCATACTTCAACATGAAATAATTTTGAAATATTTTATGCTGTGTTATTATTTGATCTTTTTTCTGGATTGTCTTCAGAGGACTGTTGCCATCCTCTCTCTCCCTCCCCGCTCGAATGATATAACTACTTGTTTTCAATTAAGTGTATGCGTAAAATGAACTATAACGAATCACTTTCTCTCTGATTGTTTTTTTATCGTGACCACTGCCTTGCGTGTTCCAATCTTTTCAGTGCCGTTTCTGATGCCTCTCTTTTCTATACTTTGCTTTGTTTCTGTATCCCTGTCTCAACACTGCTTACTTTGTGCTGTATATGTGCGTGTGTGTCTTTTCTCGTCTAGCTTTGTCGTTTCTTGG]




>consensus_4932#0
TTTGTTGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTAT
TACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACT
GATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTA
ATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGT
AATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTG
AAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTTACCATT
TATACATTTAATTTGGAAGCAGTCGATTTTACATAAACAAAAAGACACAAATATCGATGT
ATGCCCTGGTATATATATTTCAATGTCAACGAACCGTAGATAAATATGCCCTTTTTTTTA
TTTTACTTTCGTTGAATCTCATCATTTTTTGTTTGTTGTGATTTTGCATAATGATTTAGC
TATTTTTCTCTTGCCCAGTTTCTTTCATTTTCATACTTCAACATGAAATAATTNTGAAAT
ATTNTATGCTGNGTTATTATTTGATCTTTTTTCTGGATTGTCTTCAGAGGACTGTTGCCA
TCCTCTCTCTCCCTCCCCGCTCGAATGATATAACTACTTGTTTTCAATTAAGTGTATGCG
TAAAATGAACTATAACGAATCACTTTCTCTCTGATTGTTTTTTTATCGTGACCACTGCCT
TGCGTGTTCCAATCTTTTCAGTGCCGTTTCTGATGCCTCTCTTTTCTATACTTTGCTTTG
TTTCTGTATCCCTGTCTCAACACTGCTTACTTTGTGCTGTATATGTGCGTGTGTGTCTTT
TCTCGTCTAGCTTTGTCGTTTCTTGG

consensusID : consensus_4932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TTTGTCGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTATTACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACTGATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTAATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGTAATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTGAAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTCCCCCGGGGCCCC]

[+] EMBL CD078337             [TTTGTCGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTATTACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACTGATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTAATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGTAATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTGAAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTCCCCCGGGGCCCC]




>consensus_4932#1
TTTGTCGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTAT
TACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACT
GATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTA
ATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGT
AATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTG
AAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTCCCCCGG
GGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4932#0      TTTGTTGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTAT 60
consensus_4932#1      TTTGTCGTTGTTTACTTGTTTACTCAAAAATGTACAAACAATTCGTATAAACTAATGTAT 60
                      ***** ******************************************************

consensus_4932#0      TACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACT 120
consensus_4932#1      TACACGAAAACACTTTTATCTTACTGTATAAATTATTTCCATTCTGTCTGAAGTGCTACT 120
                      ************************************************************

consensus_4932#0      GATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTA 180
consensus_4932#1      GATTTTTCCCTGGAAAACTATTCCACATTCTAATTTAGCTCAATGCTATGAACTCTGCTA 180
                      ************************************************************

consensus_4932#0      ATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGT 240
consensus_4932#1      ATTCGATGTATTTCTTTTCATAACCGATATGTAGGGTTTTACGGGTGTTTGTGCGTGTGT 240
                      ************************************************************

consensus_4932#0      AATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTG 300
consensus_4932#1      AATAGAAATCCGTTTTAAAGAGACCTTGACAAATCAACTCAGTCGATTTGTTTTGTGGTG 300
                      ************************************************************

consensus_4932#0      AAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTTACCATT 360
consensus_4932#1      AAAGATAAACATGACTGACTCTTTTCTTTGGTTTTTTTCCCACCACGATTCTTCCCCCGG 360
                      *****************************************************  **   

consensus_4932#0      TATACATTTAATTTGGAAGCAGTCGATTTTACATAAACAAAAAGACACAAATATCGATGT 420
consensus_4932#1      GGCCCC------------------------------------------------------ 366
                          *                                                       

consensus_4932#0      ATGCCCTGGTATATATATTTCAATGTCAACGAACCGTAGATAAATATGCCCTTTTTTTTA 480
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TTTTACTTTCGTTGAATCTCATCATTTTTTGTTTGTTGTGATTTTGCATAATGATTTAGC 540
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TATTTTTCTCTTGCCCAGTTTCTTTCATTTTCATACTTCAACATGAAATAATTNTGAAAT 600
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      ATTNTATGCTGNGTTATTATTTGATCTTTTTTCTGGATTGTCTTCAGAGGACTGTTGCCA 660
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TCCTCTCTCTCCCTCCCCGCTCGAATGATATAACTACTTGTTTTCAATTAAGTGTATGCG 720
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TAAAATGAACTATAACGAATCACTTTCTCTCTGATTGTTTTTTTATCGTGACCACTGCCT 780
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TGCGTGTTCCAATCTTTTCAGTGCCGTTTCTGATGCCTCTCTTTTCTATACTTTGCTTTG 840
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TTTCTGTATCCCTGTCTCAACACTGCTTACTTTGTGCTGTATATGTGCGTGTGTGTCTTT 900
consensus_4932#1      ------------------------------------------------------------
                                                                                  

consensus_4932#0      TCTCGTCTAGCTTTGTCGTTTCTTGG 926
consensus_4932#1      --------------------------