cluster # 4940

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Schistosoma mansoni
cluster # 4940 cluster # 4940 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4940#0 length = 616 sequences # 2

consensus_4940#1 length = 509 sequences # 1

consensusID : consensus_4940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 616
fasta sequence

                              [CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATAGTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATGAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCAAAACAGCTTGTTGAAGTCAACTATCT]

[+] EMBL CD147695             [CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATAGTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACAC                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AW017038             [                                                                                     TAAATCTTTGTCATCTGGACAATTCCCGAACGGGATTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTTCTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATGAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCAAAACAGCTTGTTGAAGTCAACTATCT]




>consensus_4940#0
CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATA
GTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGA
TTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTT
CTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAG
TTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATG
AAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTT
TGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAG
ACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGGATCCTAAAGT
CACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGG
TTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCAAAACAGCTTG
TTGAAGTCAACTATCT

consensusID : consensus_4940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATAAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTATACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTGCTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAACGTATGGCCCCTGTATTAATTCGAGAA]

[+] EMBL CD200483             [CAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATAAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTATACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTGCTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATAAAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAACGTATGGCCCCTGTATTAATTCGAGAA]




>consensus_4940#1
CAGTTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAAC
ATAAAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTT
CTTTGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTG
AAGACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCAT
TATACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTT
CTGCTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAA
CTAAAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATG
ATAAAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTA
AACGTATGGCCCCTGTATTAATTCGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4940#0      CAGAGGAACCTTTAAAAAGCAAAATGAAAAAATCAGCTAATACAATTGATGTGTCGGATA 60
consensus_4940#1      ------------------------------------------------------------
                                                                                  

consensus_4940#0      GTGTTGACTCACTTCCTAATGCTGATAAATCTTTGTCATCTGGACAATTCCCGAACGGGA 120
consensus_4940#1      ------------------------------------------------------------
                                                                                  

consensus_4940#0      TTAATGAGAAACTTTTAAAGCAACTCACTAACGTCATGTTGGTCTCTGGATCTGGTAGTT 180
consensus_4940#1      ------------------------------------------------------------
                                                                                  

consensus_4940#0      CTAGTGGTGGGACAGAAAAGAAGTCTAAGAGTGATTATCGATTCTGGAGAACACAGCCAG 240
consensus_4940#1      ---------------------------------------------------------CAG 3
                                                                               ***

consensus_4940#0      TTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATG 300
consensus_4940#1      TTCCTGACCTCACTGAAGAGATTACTGACAATGGTCCAATTGAACCAGATTCAAAACATA 63
                      *********************************************************** 

consensus_4940#0      AAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTT 360
consensus_4940#1      AAGATATTCGCTCACAGCCTTATACATTACCTGAGGGATTTTATTGGTGTGAAGTTTCTT 123
                      ************************************************************

consensus_4940#0      TGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAG 420
consensus_4940#1      TGGATGATGAAACTGAGCTACAAGAATTGTATGATCTTCTGTATGAAAATTATGTTGAAG 183
                      ************************************************************

consensus_4940#0      ACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATG----------- 469
consensus_4940#1      ACGATGATCATCTCTTCCGATTTGATTATTCTAAACATTTCTTACAATGCCGATCATTAT 243
                      *************************************************           

consensus_4940#0      ------------------------------------------------------------
consensus_4940#1      ACTGGCTGATGCTTGATTGACGGAGGAAATTGAACTACCCCTTCTTGTTACATATTTCTG 303
                                                                                  

consensus_4940#0      ----GATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTA 525
consensus_4940#1      CTAAGATCCTAAAGTCACCTGGTTGGCATAAAGATTGGCATGTTGGACTTCGTGTAACTA 363
                          ********************************************************

consensus_4940#0      AAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATA 585
consensus_4940#1      AAAGTAAAAAGCTGGTTGGATTTATTGCAGCTATTCCATGCCATCTACAGATATATGATA 423
                      ************************************************************

consensus_4940#0      AAGCAAAACAGCTTGTTGAAGTCAACTATCT----------------------------- 616
consensus_4940#1      AAGCANAACAGCTTGTTGAAGTCAACTATCTTTGTGTCCATAAAAAATTACGTTCTAAAC 483
                      ***** *************************                             

consensus_4940#0      --------------------------
consensus_4940#1      GTATGGCCCCTGTATTAATTCGAGAA 509