cluster # 4943

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Schistosoma mansoni
cluster # 4943 cluster # 4943 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4943#0 length = 749 sequences # 2

consensus_4943#1 length = 212 sequences # 1

consensusID : consensus_4943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 749
fasta sequence

                              [GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATATCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAGTATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGAGTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATGGGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAAAAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAAACAACTTAATAATAATTCACGTTCAAAAAA]

[+] EMBL CD078488             [GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATATCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAGTATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGAGTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAAC                                                                                                                                                           ]
[+] EMBL CD178672             [                                                                                                                                                                                                                                                                                                                                                    gatgGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAAACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTTTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATGGGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAAAAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAAACAACTTAATAATAATTCACGTTCAAAAAA]




>consensus_4943#0
GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATA
TCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAG
TATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGA
GTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTC
TTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAG
CCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATT
TATTATATTGTACATGGGAGGGAACTTTTCGACTCATTCCATATCCTCTAGAAAAAGGAA
ACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGTT
TTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCAA
CTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATGG
GATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAAA
AACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAAA
CAACTTAATAATAATTCACGTTCAAAAAA

consensusID : consensus_4943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CGGCCAGAATTCGGTCCGAGGCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGAAACCNTTTTT]

[+] EMBL CD078216             [CGGCCAGAATTCGGTCCGAGGCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGAAACCNTTTTT]




>consensus_4943#1
CGGCCAGAATTCGGTCCGAGGCTTGAAATGAAACCTCTAATATTGCCTACAGAGCACATT
TTAAAACGTGGCGATTCTGAAGCCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAG
GCTGTAGAAGGTGCAATTAATTTATTATATTGTACATGGGAGGGAACTTTTCGACTCATT
TCCATATCCTCTAGAAAAAGGAAACCNTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4943#0      GCTACTTAGCTGCCCAACAATATGCTGACGCTCAGGCTTTCCTAGCTAAATACGATGATA 60
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      TCAACTATCCGAAATCAGCTACTATATGTTACACTGCAGCTTTGCTTAAAGCCAGACAAG 120
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      TATCTGAAAAATTTTCTCCGGACTTAGCGTCACGTAGGGGTTTGAATGCAGCTGAACTGA 180
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      GTGCTGTTGAAGCTATTCATCGGGCTGTTGAATTTAATCCACATGTGCCAAAATATCTTC 240
consensus_4943#1      ----------------------------------CGGCCAGAATTCGGTCCGAGG----C 22
                                                            *   **  *     *      *

consensus_4943#0      TTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAG 300
consensus_4943#1      TTGAAATGAAACCTCTAATATTGCCTACAGAGCACATTTTAAAACGTGGCGATTCTGAAG 82
                      ************************************************************

consensus_4943#0      CCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATT 360
consensus_4943#1      CCATTGCCTATGCATTTTTTCATTTAGCTCATTGGAAGGCTGTAGAAGGTGCAATTAATT 142
                      ************************************************************

consensus_4943#0      TATTATATTGTACATGGGAGGGAACTTTTCGACTCATT-CCATATCCTCTAGAAAAAGGA 419
consensus_4943#1      TATTATATTGTACATGGGAGGGAACTTTTCGACTCATTTCCATATCCTCTAGAAAAAGGA 202
                      ************************************** *********************

consensus_4943#0      AACCTCTTTTATCCATATCCCCATTCAACTACAGCAACTGATCGAGAACTTTTACCAAGT 479
consensus_4943#1      AACCNTTTTT-------------------------------------------------- 212
                      ****  ****                                                  

consensus_4943#0      TTTCATACACTATCTGTGTATCCGAAAAAAGATGTGCCATTTTTTATTCTATTTATTGCA 539
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      ACTCTATGCTCTTTAACAGCTATACTTACATGTTTAACTCATGTTTATCCTGAACAAATG 599
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      GGATCACTTTCTAGTAAGACTCTCAACTGGTTTTTCAGTCCAATCAATTATCTATTGGAA 659
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      AAACTAGAAGGATTACTACTTTTGCTAGCTCCAACGTCTGCTCGAAAGCTTTTAACTTAA 719
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      ACAACTTAATAATAATTCACGTTCAAAAAA 749
consensus_4943#1      ------------------------------