cluster # 495

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Schistosoma mansoni
cluster # 495 cluster # 495 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_495#0 length = 451 sequences # 1

consensus_495#1 length = 346 sequences # 1

consensusID : consensus_495#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCGAGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT]

[+] EMBL CD060433             [TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCGAGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT]




>consensus_495#0
TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCG
AGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGA
AAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGT
ATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGT
TGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTC
ATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCT
TGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCGAGATATAA
AGGAGAAGCTTTGTTACGTTGCTTTGGATTT

consensusID : consensus_495#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [AGCACATTATCATTATCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTATCAGAAAATGCCAGGTCCGTGGATTATAATTGAGTTTTCTGTGCTACTAATATGCACCTTCTTTTGGTTTATAACGCTGATCGTTGCAGCGGCTCATCATTCAAAAGGTGCTGGTGCTATAGCTGCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAATTAGCCACTCGATTCCGATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGGTGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT]

[+] EMBL CD068293             [AGCACATTATCATTATCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTATCAGAAAATGCCAGGTCCGTGGATTATAATTGAGTTTTCTGTGCTACTAATATGCACCTTCTTTTGGTTTATAACGCTGATCGTTGCAGCGGCTCATCATTCAAAAGGTGCTGGTGCTATAGCTGCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAATTAGCCACTCGATTCCGATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGGTGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT]




>consensus_495#1
AGCACATTATCATTATCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCT
TATCAGAAAATGCCAGGTCCGTGGATTATAATTGAGTTTTCTGTGCTACTAATATGCACC
TTCTTTTGGTTTATAACGCTGATCGTTGCAGCGGCTCATCATTCAAAAGGTGCTGGTGCT
ATAGCTGCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAATTAGCCACT
CGATTCCGATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGGTGTAATGAC
TACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_495#0      TGGTATTGTGACATAACTGGGATGATATGGAGAAGATATGGCACCACACATTCTACAGCG 60
consensus_495#1      --------------------------------------------------------AGCA 4
                                                                             *** 

consensus_495#0      AGTTGCGAGTGGCTCCAGAGGAACACCCAGTGTTGTTGACAGAAGCTCCACTGAACCCGA 120
consensus_495#1      CATTATCATTA--TCTATATGTGGAGCTAGATTTCTATATATTTTATCTATTCAATCTTA 62
                       **   * *   ** * * *   * * **  ** *  * *     ** * * ** *  *

consensus_495#0      AAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGT 180
consensus_495#1      TCAGAAAATGCCAGGT----CCGTGGATTATAATTGAG---TTTTCTGTGCTACTAATAT 115
                          **  *  **       *   *** **  *****   ***  ***** *   ** *

consensus_495#0      ATGTTGCTATTCAG---GCGGTGTTG-TCACTGTATGCATCTGGTCGTACAACTGGTA-T 235
consensus_495#1      GCACCTTCTTTTGGTTTATAACGCTGATCGTTGCA-GCGGCTCATCATTCAAAAGGTGCT 174
                              **  *        * ** **  ** * **  **  ** * ***  ***  *

consensus_495#0      AGTGTTGGACTCGGGTGATGGTGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATT 295
consensus_495#1      GGTGCTATAGCT--GCGGCTGTATTTTCTGCAATCGCTCTTGCGGTTTACATCACAGAAT 232
                      *** *  *     * *   ** *   *  **      *   *  *  *  * *   * *

consensus_495#0      GCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAA 355
consensus_495#1      TAGCCACTCGATTCCG-ATGTGAACGCACGAGGGAATGGCTTCATCATCACAATGACTGG 291
                         **  *****  *  * ** **      ** *  *   * * *  *   ****    

consensus_495#0      GATCTTGACTGAGAG---AGGTTACAGTTTTACTACTACTGCAGAACGTGAAATTGTGCG 412
consensus_495#1      TGTAATGACTACGCATGCAACACATGGTCCGCCTACATTTGCTCAACCCACCCAT----- 346
                       *  *****  *     *    *  **    ****   ***  ***       *     

consensus_495#0      AGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTT 451
consensus_495#1      ---------------------------------------