cluster # 4955

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Schistosoma mansoni
cluster # 4955 cluster # 4955 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4955#0 length = 304 sequences # 1

consensus_4955#1 length = 249 sequences # 1
consensus_4955#2 length = 192 sequences # 1

consensusID : consensus_4955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAGGAAAAATGGATTCAGCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGGTGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTTTTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCCTTGGAG]

[+] EMBL AW186621             [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAGGAAAAATGGATTCAGCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGGTGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTTTTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCCTTGGAG]




>consensus_4955#0
CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGTC
GACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAGGAAAAATGGATTCAGC
GAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGGTG
GCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTTTT
TTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCCTT
GGAG

consensusID : consensus_4955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGTACAGTCGCTAATGCCCGTCGCTCGCTTGCGTGATCGAGCCGCGTGGTAGGGCAGTATTACCTGGTAGGTCCGGGCTCTGGCTTGTCCAGCTGGTTGAATGGAATCGAACAGCCGTCTTAATCCGGAATTTTGACGAAGGCACCATATCCGAG]

[+] EMBL AW186623             [CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGTACAGTCGCTAATGCCCGTCGCTCGCTTGCGTGATCGAGCCGCGTGGTAGGGCAGTATTACCTGGTAGGTCCGGGCTCTGGCTTGTCCAGCTGGTTGAATGGAATCGAACAGCCGTCTTAATCCGGAATTTTGACGAAGGCACCATATCCGAG]




>consensus_4955#1
CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTATCTCGAGGTCG
ACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGTACAGTCGCTAATGCCCGTCGCTC
GCTTGCGTGATCGAGCCGCGTGGTAGGGCAGTATTACCTGGTAGGTCCGGGCTCTGGCTT
GTCCAGCTGGTTGAATGGAATCGAACAGCCGTCTTAATCCGGAATTTTGACGAAGGCACC
ATATCCGAG

consensusID : consensus_4955#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCACGGAACGGCTAACCACTCAATCGACAGGCGGAACGAATAATCTGATAAACGATGTTCACCATTACCCCTGAC]

[+] EMBL AW186620             [CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGTCGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCACGGAACGGCTAACCACTCAATCGACAGGCGGAACGAATAATCTGATAAACGATGTTCACCATTACCCCTGAC]




>consensus_4955#2
CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGT
CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCA
CGGAACGGCTAACCACTCAATCGACAGGCGGAACGAATAATCTGATAAACGATGTTCACC
ATTACCCCTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4955#1      -CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATT-ATCTCGAGGT 58
consensus_4955#2      CCGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATTTATCTCGAGGT 60
consensus_4955#0      -CGGTTTCTGTCGGGAAAGGTGGGGATCAAGATCTTGTTATAACATATATATCTCGAGGT 59
                       ***********************************************  **********

consensus_4955#1      CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAAGT-ACAG--TCGCTAATGC-CCG 114
consensus_4955#2      CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAACTCACGAGTTTGCGGTAGCATCA 120
consensus_4955#0      CGACAAGCTTTTTAAATCATGAAGGCCTAATGTAGAGACTGCTAG-GAAAAATGGATTCA 118
                      ************************************     *            *   * 

consensus_4955#1      TCGCTCGCTTGCGTGATCG-AGCCGCGTGGT-----AGGGCAGTATTACCTGGTAGGTCC 168
consensus_4955#2      CGGAACGGCTAACCACTCA-ATCGACA-GGC-----GGAACGA-ATAATCTGATAAA-CG 171
consensus_4955#0      GCGAGCGATGACACGCATGCAACCCCGTGAACACTAATATCGATGGGATTAGGAGCACGG 178
                        *  **             * *  *  *           *      *   *        

consensus_4955#1      GGGCTCTGGCTTGTCCAGCTGGTTGAATG-GAATCGAACAGCCGTCTTAATCCGGAATTT 227
consensus_4955#2      ATGTTCACCATTACCC--CTGAC------------------------------------- 192
consensus_4955#0      TGGCAGTCAGCTGATTCGCTGCCAAAGTGCGACTCAAATGCTGGACGCAACGAGCGACTT 238
                        *        *      ***                                       

consensus_4955#1      TGACGAA---GGCACCATATCCGAG----------------------------------- 249
consensus_4955#2      ------------------------------------------------------------
consensus_4955#0      TTTTGAAACGGGCCCGGTGCCCCAGACCGCGTATTCCGAGAGCCACGACAACGTCGCGCC 298
                                                                                  

consensus_4955#1      ------
consensus_4955#2      ------
consensus_4955#0      TTGGAG 304