cluster # 4983

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Schistosoma mansoni
cluster # 4983 cluster # 4983 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4983#0 length = 520 sequences # 1

consensus_4983#1 length = 255 sequences # 2

consensusID : consensus_4983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGTGTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTAAAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGGATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTAATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATGTTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC]

[+] EMBL CD181661             [GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGTGTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTAAAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGGATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTAATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATGTTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC]




>consensus_4983#0
GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGT
GTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTA
AAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGG
ATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTA
ATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAAC
CTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTA
ATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCAT
CAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATG
TTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC

consensusID : consensus_4983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 255
fasta sequence

                              [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAAGCCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG]

[-] EMBL CD130677             [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCATCAACTGAAAGAAGCCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG]
[-] EMBL CD130645             [CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACC                                                         ]




>consensus_4983#1
CACAGCTCCTTGTTTACGTAATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTT
TGTATTACCATGACATAAACCTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTG
ATGTACACGTAACATACGTAATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGC
TGTTTCCAATGGTAAACCATCAACTGAAAGAAGCCGTGTCGCAGTAATCGAATTNCCCGC
GGCCGCCCCATGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4983#0      GCGGCCGAGGAGAATTCGATTCTGCTGATTCGAAGCTGAGTGGAGTAAGGCAGTGTGTGT 60
consensus_4983#1      ------------------------------------------------------------
                                                                                  

consensus_4983#0      GTGTGTATGTATGTATGTATAAAACAACAGCGAAAAACAGAGAAGCAAGAGAACGTCTTA 120
consensus_4983#1      ------------------------------------------------------------
                                                                                  

consensus_4983#0      AAAAAGAGTCAATGAAAACAACTTATGTTTCCACTAAACGGAAAAAGTTTGGTCCACGGG 180
consensus_4983#1      ------------------------------------------------------------
                                                                                  

consensus_4983#0      ATATATAAATATCTGAGTAGGCAACTTCTTGTGCTAATTCCACAGCTCCTTGTTTACGTA 240
consensus_4983#1      ----------------------------------------CACAGCTCCTTGTTTACGTA 20
                                                              ********************

consensus_4983#0      ATAGTAGAATTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAAC 300
consensus_4983#1      ATAGTAGAACTGTATAGAATTTTGAAGCAGCTTGCTTCTTTGTATTACCATGACATAAAC 80
                      ********* **************************************************

consensus_4983#0      CTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTA 360
consensus_4983#1      CTTGTAATGTTAACGGTTCATTCCAACCATATTGTTGTTGATGTACACGTAACATACGTA 140
                      ************************************************************

consensus_4983#0      ATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCAT 420
consensus_4983#1      ATAACACTTTAGAACGTTTCTCTAAACGACGTTCCTCAGCTGTTTCCAATGGTAAACCAT 200
                      ************************************************************

consensus_4983#0      CAACTGAAAGAGGAGCTTCAGATCCAGGAAAACCACTGCCAGATAATAAACCATCACATG 480
consensus_4983#1      CAACTGAAAGAAG---CCGTGTCGCAGTAATCGAATTNCCCGCGGCCGCCCCATGGCG-- 255
                      *********** *       *   *** **    * * ** *        ****  *   

consensus_4983#0      TTCTACCATCATTTTTAAATACATTTTCTAATTCATTATC 520
consensus_4983#1      ----------------------------------------