cluster # 4995

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Schistosoma mansoni
cluster # 4995 cluster # 4995 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4995#0 length = 580 sequences # 1

consensus_4995#1 length = 578 sequences # 2

consensusID : consensus_4995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT]

[+] EMBL CD116783             [GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCAAACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT]




>consensus_4995#0
GCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTA
ACTCCGTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTA
ACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTC
AGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCT
TCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAA
TTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGA
ACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGT
GTCCTACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTC
AGTTCATTTTATAGCTGATATATATTATGGGCTATTAAATCCCATAAAAACCAATTTTCA
AACAGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT

consensusID : consensus_4995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 578
fasta sequence

                              [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG]

[+] EMBL CD154783             [TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTA                                 ]
[-] EMBL CD185177             [                                                    AGGGCATTTCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCCGTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGTTAACCTGGTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCCCTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATCTATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAATGTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATGTCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCTACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGCTGTTACATCTGAACTATGTAAATCAACACAAACGTCAG]




>consensus_4995#1
TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATT
TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC
GTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG
GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC
CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC
TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT
GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG
TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCT
ACAGTTGCGAAGGAAGTTAACTGATCGTCGCTCGTTCACTGGGGACCACTCTATCCAAGC
TGTTACATCTGAACTATGTAAATCAACACAAACGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4995#0      -------------------------------------------------------GCATT 5
consensus_4995#1      TTTTATTGAAAGCTGTCAAATCGACAAGTCGTTGTTTACTCTCGGGAAGAGAAGGGCATT 60
                                                                             *****

consensus_4995#0      TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 65
consensus_4995#1      TCCATCCCCTGAACCACGTTCAGTTGTTCATGATACTTGTCCACTGTTTTCCGTAACTCC 120
                      ************************************************************

consensus_4995#0      GTGCCGTTCGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 125
consensus_4995#1      GTGCCGTTTGGTCAATAAACGACGGGATTTTGTTTCTTATCGTGATTCCTTGCTAACCTG 180
                      ******** ***************************************************

consensus_4995#0      GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 185
consensus_4995#1      GTTATTGAAGGATAGTTTAGGAGGCAATGCAGTCACAGTAATGCTGGCAACTGTCAGTCC 240
                      ************************************************************

consensus_4995#0      CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 245
consensus_4995#1      CTGTCAAACTCATTACGACGAAACACTAAGCACTTTACGTTATGCCAAAAAGGCTTCATC 300
                      ************************************************************

consensus_4995#0      TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 305
consensus_4995#1      TATTATTAATTCAGCGATGGTCAATGAAGATCCGAAAAGTCGATTGATTCGTGAATTAAT 360
                      ************************************************************

consensus_4995#0      GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 365
consensus_4995#1      GTCCGAATTACGTATCTTACGACAGAAAGCATCTTCAATTATGTTTGAATCCGGAACATG 420
                      ************************************************************

consensus_4995#0      TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGTAGAAGGTGTCCT 425
consensus_4995#1      TCAAGCTTATGAGGCAGCTAAGCTTAGAGAATTAATTTCCATTCGTGAAGAAGGTGTCCT 480
                      *********************************************** ************

consensus_4995#0      ACAGTTGCGAAGGTATTTTTTATTAATTGTCTCTTATACTCCCCACACATTTCTCAGTTC 485
consensus_4995#1      ACAGTTGCGAAGGAAGTTA--ACTGATCGTCGCTCGT--TCACTGGGGACCACTCTATCC 536
                      ************* * **   * * ** *** **  *  ** *     *   ***  * *

consensus_4995#0      ATTTTATAGCTGATATATATTATGGGCTAT-TAAATCC-CATAAAAACCAATTTTCAAAC 543
consensus_4995#1      A------AGCTGTTACATC---TGAACTATGTAAATCAACACAAACGTCAG--------- 578
                      *      ***** ** **    **  **** ******  ** ***   **          

consensus_4995#0      AGTTACATCCGATTTCAAGTCAAAAACAATAAAAAAT 580
consensus_4995#1      -------------------------------------