cluster # 5025

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Schistosoma mansoni
cluster # 5025 cluster # 5025 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5025#0 length = 697 sequences # 2

consensus_5025#1 length = 585 sequences # 1

consensusID : consensus_5025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 697
fasta sequence

                              [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCCCAAGGTCAACACTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGC]

[+] EMBL CD116638             [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCCCAAGGTCAACACTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGC]
[+] EMBL CD116982             [ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCCAATTTACGTAAACCATATTTGTCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATAAGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTACCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAA                                                                                                                                                                                                                                                                                 ]




>consensus_5025#0
ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCC
AATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATA
AGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTA
CCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATA
ATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACT
ACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCCTATAATTAG
CGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCA
TTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCC
CAAGGTCAACACTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTC
TGCGACTATGATGCGCTGAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAG
TTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACA
CAAATGACCACGACAATGACTATATGAACGGGTACGC

consensusID : consensus_5025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TAACTTCAACCATAAGCCATAGTAGAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAAAGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTCAACAATAATTACATTGTAA]

[-] EMBL CD201566             [TAACTTCAACCATAAGCCATAGTAGAATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAAAGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTCAACAATAATTACATTGTAA]




>consensus_5025#1
TAACTTCAACCATAAGCCATAGTAGAATACGTGCCGGTGTAGGATATTCATCATAGCATA
CTTCTGCTAAATGTCTACCTGACACTACACCCAAACGAGCAGCCAGACGTTGTAGAAATA
ATCCCATCAATGTAGCTAGGAGTAAAAGCCATAGAAGCCTATAATTAGCGATTGCACCAC
TTTGCAAATCTGATTCTATATTTCCAGGATCCAGATAGGCAATACTCATTAAGAATCCAG
GGCCTGTGAACGTCCATAATCGTTGAAAACTGAACATGTTTCTCTCCTTTAACAGAAAAC
GCGGATACCCAAGGTCAACATTGACACCAATTTTTCCAAAATCTTCTGAATGTGGTGAAT
TTCGTGGTCTGCGACTATGATGCGCTGAAATGGGTTTTACTGTCCTTGATTGATCAGAAA
GTAATGGAGTTCTGCCCTCGTTTTCCTCTCCATCTAAACAGACATGCATAATTAACAGCG
TTACACACACAAATGACCACGACAATGACTATATGAACGGGTACGCTTCCTATTCTGGGC
CACCAGCTACAGTAAACGACGACCTCAACAATAATTACATTGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5025#0      ATATACTCATAACCAAATGTCACAGCCATAATAGTTATTAAAAGTCCAAAAAAGAACTCC 60
consensus_5025#1      ------------------------------------------------------------
                                                                                  

consensus_5025#0      AATTTACGTAAACCATATTTATCAAGAAATAAAAAGGTGAAAGTATCCAAAATAGTAATA 120
consensus_5025#1      ------------------------------------------------------------
                                                                                  

consensus_5025#0      AGTACACCAGCCCATAAAGGTATATAACCAACACTTAGTAAATTTATAGCTATAGCAGTA 180
consensus_5025#1      ------------------------------------------------------------
                                                                                  

consensus_5025#0      CCAATCACCTCTTGCATATCTGACCCAATAATTGCAACTTCAACCATAAGCCATAGTATA 240
consensus_5025#1      ----------------------------------TAACTTCAACCATAAGCCATAGTAGA 26
                                                         *********************** *

consensus_5025#0      ATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACT 300
consensus_5025#1      ATACGTGCCGGTGTAGGATATTCATCATAGCATACTTCTGCTAAATGTCTACCTGACACT 86
                      ************************************************************

consensus_5025#0      ACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGC---------- 350
consensus_5025#1      ACACCCAAACGAGCAGCCAGACGTTGTAGAAATAATCCCATCAATGTAGCTAGGAGTAAA 146
                      **************************************************          

consensus_5025#0      ------------CTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCA 398
consensus_5025#1      AGCCATAGAAGCCTATAATTAGCGATTGCACCACTTTGCAAATCTGATTCTATATTTCCA 206
                                  ************************************************

consensus_5025#0      GGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGA 458
consensus_5025#1      GGATCCAGATAGGCAATACTCATTAAGAATCCAGGGCCTGTGAACGTCCATAATCGTTGA 266
                      ************************************************************

consensus_5025#0      AAACTGAACATGTTTCTCTCC---------------------CCAAGGTCAACACTGACA 497
consensus_5025#1      AAACTGAACATGTTTCTCTCCTTTAACAGAAAACGCGGATACCCAAGGTCAACATTGACA 326
                      *********************                     ************ *****

consensus_5025#0      CCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCT 557
consensus_5025#1      CCAATTTTTCCAAAATCTTCTGAATGTGGTGAATTTCGTGGTCTGCGACTATGATGCGCT 386
                      ************************************************************

consensus_5025#0      GAAATGGGTTNTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCC 617
consensus_5025#1      GAAATGGGTTTTACTGTCCTTGATTGATCAGAAAGTAATGGAGTTCTGCCCTCGTTTTCC 446
                      ********** *************************************************

consensus_5025#0      TCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAAT 677
consensus_5025#1      TCTCCATCTAAACAGACATGCATAATTAACAGCGTTACACACACAAATGACCACGACAAT 506
                      ************************************************************

consensus_5025#0      GACTATATGAACGGGTACGC---------------------------------------- 697
consensus_5025#1      GACTATATGAACGGGTACGCTTCCTATTCTGGGCCACCAGCTACAGTAAACGACGACCTC 566
                      ********************                                        

consensus_5025#0      -------------------
consensus_5025#1      AACAATAATTACATTGTAA 585