cluster # 503

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Schistosoma mansoni
cluster # 503 cluster # 503 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_503#0 length = 643 sequences # 1

consensus_503#1 length = 613 sequences # 1

consensusID : consensus_503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACCAGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATTACTATTATTAATTTGCAACGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATAAGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAAATAAAAGGGTAGACAAGTGTAAACGGATGTTTTTGTAAAACAACAAAACTCATAAAATTACAGATGATACTAAAAAAATATATATGTATATTATATTTTAAATAGAAAAATCAACAGTTTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA]

[+] EMBL CD074845             [ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACCAGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATTACTATTATTAATTTGCAACGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATAAGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAAATAAAAGGGTAGACAAGTGTAAACGGATGTTTTTGTAAAACAACAAAACTCATAAAATTACAGATGATACTAAAAAAATATATATGTATATTATATTTTAAATAGAAAAATCAACAGTTTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA]




>consensus_503#0
ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACC
AGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATT
ACTATTATTAATTTGCAACGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATAAG
AACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAAATAAAAGGGTAGA
CAAGTGTAAACGGATGTTTTTGTAAAACAACAAAACTCATAAAATTACAGATGATACTAA
AAAAATATATATGTATATTATATTTTAAATAGAAAAATCAACAGTTTGAGCCAAATATAA
ATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAA
GTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAA
AGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCAATTTAAAGAGAAT
ATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATAT
TACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA

consensusID : consensus_503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [ACTAAAAAAATNNNNNNNNNNNNNNNNNNTAAATAGAAAAATCAACAGTNTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAAATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTTAGGATTGGAAAATCCTGAATAACCATTTCTGACTTTAAGCATCAGGTGCATTCGACAGTGATGAAAATGATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACGACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAGCATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGTGCAGCACC]

[-] EMBL CD081019             [ACTAAAAAAATNNNNNNNNNNNNNNNNNNTAAATAGAAAAATCAACAGTNTGAGCCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAAATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTTAGGATTGGAAAATCCTGAATAACCATTTCTGACTTTAAGCATCAGGTGCATTCGACAGTGATGAAAATGATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACGACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAGCATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGTGCAGCACC]




>consensus_503#1
ACTAAAAAAATNNNNNNNNNNNNNNNNNNTAAATAGAAAAATCAACAGTNTGAGCCAAAT
ATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTG
ATAAGTAGTTGCGGTTAAAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTAC
AGAAAGCTTATAACAACGTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAAT
GGTAAAATCAACTTTGATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACG
AGCATACAGTATGAAAATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCT
CTTTGAAATCTTGCTTAGGATTGGAAAATCCTGAATAACCATTTCTGACTTTAAGCATCA
GGTGCATTCGACAGTGATGAAAATGATGGTAATGATGATTGTTCAGCACTGAAGCAACAT
TGACGACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACC
ATAAGCATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTC
CAAGTGCAGCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_503#0      ATGATACATACATAGATTAGTGAACGTTGGTTGATTATATTTTGAAGATAACTACTAACC 60
consensus_503#1      --------------------------------------ACTAAAAAAATNNNNNNNNNNN 22
                                                           * *   ** **           

consensus_503#0      AGTTAATACGAAACATGATTCAATGTTCAGTTTTTACGATATGATAAACATATTATTATT 120
consensus_503#1      NNNNNNNTAAATAGAAAAATCAA----CAGTNTGAGCCAAAT-ATAAATCGAAAACTGTT 77
                               * * *  * ****    **** *   * * ** *****   *  * * **

consensus_503#0      ACTATTATTAATTTGCAA--CGATCAAAAAGCTTTTGAGTATAAAATAGGACGAAAGATA 178
consensus_503#1      ATTAAAACTAATTATTAAATCATTTACATATTGTTTTAGGTTGATAAGTAGTTGCGGTTA 137
                     * **  * *****   **  *  * * * *   *** **  * * *          * **

consensus_503#0      AGAACAATACAAATTAAAATTGTTACAATTTTACGTTACGAAGATGAAA---ATAAAAGG 235
consensus_503#1      AAAACTACCCCTATTTTAATCACAGTTGTCACCTCTTGAGTACAGAAAGCTTATAACAAC 197
                     * *** *  *  ***  ***        *      **  * * *  **    **** *  

consensus_503#0      GTAGACAAGTGTAAACGGATGTT--TTTGTAAAACAACAAAACTCATAAAATTACAGATG 293
consensus_503#1      GTTGTCAATTTAAAGAGAATATAAATCGACAAACCGGCAGAA-TGGTAAAATCAACTTTG 256
                     ** * *** *  **  * ** *   *    *** *  ** ** *  ****** *    **

consensus_503#0      ATACTAAAAAAATATATATGT-ATATTATATTTTAAATAGAAAAATCA-ACAGTTTGAG- 350
consensus_503#1      ATAAATAAGCAACGATGATATTACTTTTTTTTTCAGAAAACACGAGCATACAGTATGAAA 316
                     ***   **  **     ** * *  ** * *** * * *  *  * ** ***** ***  

consensus_503#0      -CCAAATATAAATCGAAAACTGTTATTAAAACTAATTATTAAATCATTTACATATTGTTT 409
consensus_503#1      ATTGNNNNNNNNNNNNNNNCTAGCGAAGCATTTCGACACAATCTCTTTGAAATCTTGCTT 376
                                        **        *  *    *  *  ** ** * ** *** **

consensus_503#0      TAGGTTGATAAGTAGTTGCGGTTAAAAACTACCCCT-ATTTTAATCA-CAGTTGTCACCT 467
consensus_503#1      AGGATTGGAAAATCCT------GAATAACCATTTCTGACTTTAAGCATCAGGTGCA--TT 428
                       * ***  ** *  *       ** *** *   ** * ***** ** *** **     *

consensus_503#0      CTTGAGTACAGAAAGCTTAAATATTTTTGCTCAATGTCAAAATAGATAACAACGTTGTCA 527
consensus_503#1      CGACAGTGATGAAAAT---GATGGTAATGATGATTGTTCAGCACTGAAGCAACATTGACG 485
                     *   ***   ****      **  *  ** * * ***  *       * **** *** * 

consensus_503#0      ATTTAAAGAGAATATAAATCGACAAACCGGCAGAATGGT-AAAATCAACTTTGATAAATA 586
consensus_503#1      ACTTTCACTGGCTACCATGCGAAAAAGCAAGATTGCGGCCAGAGCTAACGCAACCATAAG 545
                     * **  *  *  **  *  *** *** *   *    **  * *   ***      * *  

consensus_503#0      AGCAACGATGATATTACTTTTTTTTTCAGAAACACGAGCATACAGTATGAAAATTGA--- 643
consensus_503#1      CATAATAATAATGACAGACCAACCATAGGTTTCATGAGACCACATAGTAAAGGTCCAAGT 605
                        **  ** **   *         *  *   ** ***   ***   * **  *  *   

consensus_503#0      --------
consensus_503#1      GCAGCACC 613