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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence
[GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA]
[+] EMBL CD080098 [GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTTAGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATTTCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAATTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATTGCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCATGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAGAAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAACANACCACGTATGATTAAGATGACTCTTATCACTTCGGATAGAGTACTAATCTATGACATCGATATTGATTTACAACATATTCTACATTGNATCCAAACTGCTTATATGAGTGCATGGNNAGCATGTATTACTGATTGTAAACCTTCTTATTATTTTTTTAAA]
consensusID : consensus_5044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence
[CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA]
[+] EMBL CD082715 [CTCGAGGCCANAATTCGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGTTCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACCATTATTTATTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCAGCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCTCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAAC ]
[-] EMBL CD076305 [ ATGGAATATACTCCCGGATCTCGGTTATCAGCAAATACTTCGTTGGACCCTATTGAAGGAGGAAATACACTTGTTGCTAATATAAATGTTTCACGTGATAAGTATTCAGAAGTTCATCAGAATCTTACAAAGAACACTGCTTCCGAACCGCTTGAAAATAGTGTCGAAACGGTTATCTCACTCAATACAGAAACTCCTTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCAAACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAATGAACATCGTATATTGATTTTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCTTATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAACTGTAATTTGTAAAACACGTTTTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTATTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTGATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCGAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5044#0 GGAAAAAAATGCATTAAATTGGTATGTAGTCTTTATACCAATTTATTGTTTATGCGTTTT 60
consensus_5044#1 ------------------------------------------------------------
consensus_5044#0 AGGATTTTTGACATTCACAAAAGCGTTTTGTGAGTTAACTGTTTATGATTGTGAGAAATT 120
consensus_5044#1 ------------------------------------------------------------
consensus_5044#0 TCTTGCATTAAATCTTCCATGTGTCATTCTAATTGCCTTACGTTTAGATAATTATATTAA 180
consensus_5044#1 ------------------------------------------------------------
consensus_5044#0 TTGGACATGGGTTGTAGTGTTAATACCATTCTGGATTATAATGGGATTTTTGATTGTATT 240
consensus_5044#1 ------------------------------------------------------------
consensus_5044#0 GCTGCTATTTTTAGTTTGTATGTTGTGCGGATTGAGTCGTTTCACTCAGAAAGATCTTCA 300
consensus_5044#1 -------------------------------------------------------CTCGA 5
** *
consensus_5044#0 TGATATTGTTTCAATGATTGGATGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 360
consensus_5044#1 GGCCANAATT----CGGCACGAGGCACATCAATTGCATTTACTTTTCTCATATTCGTTGT 61
* * ** * ** *************************************
consensus_5044#0 TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 420
consensus_5044#1 TCTTTTGATCTGCCGATTAGATAATATTAAACTGTTTACATATAATGAAATATTCTTACC 121
************************************************************
consensus_5044#0 ATTATTTANTTTGTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 480
consensus_5044#1 ATTATTTATTT-GTGTTTTTTTTCTGATGATTATGACGATTTCTACAAACTGGTTAGTCA 180
******** ** ************************************************
consensus_5044#0 GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 540
consensus_5044#1 GCAAATTTTGCGGAAATATCAATAGTTCTAGTGGAAGAAATTGTTTAATGGAATATACCT 240
************************************************************
consensus_5044#0 CCGGATCTCGGTTATCAGCAAATACCTTCGTTGGACCCTATTGAAGGAGGAAATACACTT 600
consensus_5044#1 CCGGATCTCGGTTATCAGCAAATAC-TTCGTTGGACCCTATTGAAGGAGGAAATACACTT 299
************************* **********************************
consensus_5044#0 GTTGCTAATATAAATGTTTCACGTGATAAGTATTTCAGAAGTTCATCAGAATCTTACAAA 660
consensus_5044#1 GTTGCTAATATAAATGTTTCACGTGATAAGTATT-CAGAAGTTCATCAGAATCTTACAAA 358
********************************** *************************
consensus_5044#0 GAACACTGCTTCCGAACCGCTTGAAAATAGTNGTCGAAACGGTTATCTCACTTCATACAG 720
consensus_5044#1 GAACACTGCTTCCGAACCGCTTGAAAATAGTG-TCGAAACGGTTATCTCACTCAATACAG 417
******************************* ******************* ******
consensus_5044#0 AAACTNCCTTGCAGNTATTTACTAAAATAAAGACAACATTNTCTTCATTCGAATAAAC-A 779
consensus_5044#1 AAACTCC-TTGCAGTAATTTACTAATAAAAGACAAACATTTTCTTCATTCGAATAAACCA 476
***** * ****** ********* * ** ****** ***************** *
consensus_5044#0 NACCA-CGTATGATTAA-GATGACTCTT-ATCACTTCGGA--TAGAGTACT--AATCTAT 832
consensus_5044#1 AACCAACGTATGATTAAAGATGACTCTTTATCACTTCCGGATTAGAGTACCTAAATCTAA 536
**** *********** ********** ******** * ******** ******
consensus_5044#0 --GACATCG-ATATTGATTT-ACAAC--ATATTCT-ACATTGN--ATCCAAA---CTGCT 880
consensus_5044#1 TGAACATCGTATATTGATTNTACAAACAATATTCTTACATTTGTAATCTCAAATACTGCT 596
****** ********* **** ******* ***** *** ** *****
consensus_5044#0 TATATG---AGTGCA--TGGNNAGCATG-TATTACTGA--------TTGTAAACC---TT 923
consensus_5044#1 TATTTATGAAGTGCAATTGTAGAGGACAATGTTATTTAAACGTAATTTGTAAAACACGTT 656
*** * ****** ** ** * * *** * * ******* * **
consensus_5044#0 CTTATTATTTTTTTAAA------------------------------------------- 940
consensus_5044#1 TTCATTATTTATTTTTTTTGTAAAAAAGACGTTTATTACAATGAATCGGCTTAATTTGTA 716
* ******* ***
consensus_5044#0 ------------------------------------------------------------
consensus_5044#1 TTGAGATTAACAGATTTTGAGCGATTATTTAATTCATTATTCATGTTTGTGAAATAAGTG 776
consensus_5044#0 ------------------------------------------------------------
consensus_5044#1 ATAAATTCTACTATTCACAAAGTTCATTTATGACTGATACAACTATGAAATAAATCCCCG 836
consensus_5044#0 ------
consensus_5044#1 AGAAAA 842
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||