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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 857 fasta sequence
[AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAATGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAAATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGTGTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTNTCTTGATCCCATG-TTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTNAGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATATGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCCGTTCATCACGTACTGGA]
[+] EMBL CD124225 [AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAATGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAAATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGTGTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTNTCTTGATCCCATG TTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTNAGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATATGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCCGTTCATCACGTACTGGA]
[+] EMBL CD145185 [ GGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACGGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTGATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTTTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGAT CCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCAT GTTTTTGTTTATTAACATGGTTAAAGTTag ]
consensusID : consensus_5050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[AGGAAACGTGGGTGATCCGACAAAATTCTCGCTATTCTTNTAGCCATCCATAAATGGATTGTATTCACATATCCTCGAGAACCACCATGTTTATGTCGTCATCGTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTCGGAACCCATTTTCAAATAAAATGCTTCAATCGTACAATATGCAATAAATATTCGAAATAAAGGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCATGTTTTTGTTTATTAACATGGTTAAGTTTAGTTGGTCGTAGAGCATATTTACGTCGTAATAATTTGAATACACGTCCATATTGTTCATTATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACACGTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGGAAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCAATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATGGATTTCGTACTACACC]
[-] EMBL CD145272 [AGGAAACGTGGGTGATCCGACAAAATTCTCGCTATTCTTNTAGCCATCCATAAATGGATTGTATTCACATATCCTCGAGAACCACCATGTTTATGTCGTCATCGTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTCGGAACCCATTTTCAAATAAAATGCTTCAATCGTACAATATGCAATAAATATTCGAAATAAAGGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCATGTTTTTGTTTATTAACATGGTTAAGTTTAGTTGGTCGTAGAGCATATTTACGTCGTAATAATTTGAATACACGTCCATATTGTTCATTATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACACGTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGGAAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCAATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATGGATTTCGTACTACACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5050#0 AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAA 60
consensus_5050#1 ------------------------------------------------------------
consensus_5050#0 TGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAA 120
consensus_5050#1 ------------------------------------------------------------
consensus_5050#0 ATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGT 180
consensus_5050#1 ------------------------------------------------------------
consensus_5050#0 GTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTA 240
consensus_5050#1 ----------------AGGAAACGTGGGTGATCC-GACAAAATTCTCG-CTATTCTTNTA 42
*** ***** ******* ************* ******** **
consensus_5050#0 GACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTC 300
consensus_5050#1 GCCA-TCCATAAATGGATTGTATTCACAT-ATCCTCGAGAACCACCATGTTTATGTCGTC 100
* ** ** ******* ***** * **** *********** ******************
consensus_5050#0 ATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTT 360
consensus_5050#1 ATC-GTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTC 159
*** *** ********** **************************** ******
consensus_5050#0 CGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATA 420
consensus_5050#1 GGAACCCATTTTCAAATAAAA-TGCTTCAATCGTACAATATGCAATAAATATTCGAAATA 218
*** **************** *********************** *************
consensus_5050#0 AATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTC 480
consensus_5050#1 AA-GGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTT-AATCACAGAAAAAGCTC 276
** ** ****** ********************** ***** *****************
consensus_5050#0 TTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTT 540
consensus_5050#1 TTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTT 336
************************************************************
consensus_5050#0 TAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTA 600
consensus_5050#1 TAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTA 396
************************************ **********************
consensus_5050#0 TTCTACGTGAATATTNTCTTGATCCCATGTTATGTCGACCATGTAAAACTGCTTATTCAT 660
consensus_5050#1 TTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCAT 456
*************** ********* *******************************
consensus_5050#0 GGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTN 720
consensus_5050#1 GGTTTAAAATACCAGCTATGCTTTTAGCATG-TTTTTGTTTATTAACATGGTT-AAGTTT 514
********** *********** ****** * *** ************ *****
consensus_5050#0 AGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATA 780
consensus_5050#1 AGTTGG--TCGTAGA-GCATATTTA--CGTCGTAATAATT--TGAATACACGT--CCATA 565
** * * ***** ******** ****** **** ********** *****
consensus_5050#0 TGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCC 840
consensus_5050#1 TTGTTCATT-ATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACAC 624
* * **** **************** ** ** *********************** *
consensus_5050#0 GTTCATCACGTACTGGA------------------------------------------- 857
consensus_5050#1 GTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGG 684
*****************
consensus_5050#0 ------------------------------------------------------------
consensus_5050#1 AAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCA 744
consensus_5050#0 ------------------------------------------------------------
consensus_5050#1 ATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATG 804
consensus_5050#0 ----------------
consensus_5050#1 GATTTCGTACTACACC 820
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||