cluster # 5068

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Schistosoma mansoni
cluster # 5068 cluster # 5068 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5068#0 length = 596 sequences # 2

consensus_5068#1 length = 391 sequences # 1

consensusID : consensus_5068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 596
fasta sequence

                              [CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAGCACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTGGTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTATCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGTTCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC]

[+] EMBL CD116244             [CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAGCACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTGGTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTATCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGTTCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC]
[-] EMBL AI619006             [                                                                  TAG TTGTAAACAG TTTTAGGAATA TTTGCAC TTTGGGCGCATA TACGTGGTGTCACCTCATATGG TTCTCATTATTAAAAATACCCCCCTGACCGT ATTACACACGATTGATAGACCGTACC TGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCCAAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGTAATTGTATAATTTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCTATA TTTGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCT                                                                         ]




>consensus_5068#0
CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAG
CACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTG
GTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGA
TTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCC
AAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAATTGTATAATT
TGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTTT
GTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATCG
CCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAT
CTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGTT
CAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC

consensusID : consensus_5068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [ACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGATGGAGAGCTATATTTTGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTTGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGATTGAGCAACTCTTCACTTTTCGCATCTAATCCACCGTTTGCATAAATCATATTAACAAGAATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGTTTATTCTATTCTG]

[-] EMBL CD142011             [ACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGATGGAGAGCTATATTTTGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTTGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGATTGAGCAACTCTTCACTTTTCGCATCTAATCCACCGTTTGCATAAATCATATTAACAAGAATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGTTTATTCTATTCTG]




>consensus_5068#1
ACACGATTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCT
TGGATGGAGAGCTATATTTTGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTG
ACGTAAGATGCATTTGTTTGCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTT
CAATGGTGACATATATTTAGCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTG
TCTGTATTTTCTATGCAGATTGAGCAACTCTTCACTTTTCGCATCTAATCCACCGTTTGC
ATAAATCATATTAACAAGAATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACG
TAAGAACATTATGATAGTTTATTCTATTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5068#0      CAATCCATGACACCTTTTTTTGGCTTTGCTTTATTGGCTTCTGTACATGTTGTGTATGAG 60
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      CACGACTAGTTTGTAAACTGTTTTTAGGAATATTTTGCACTTTTGGGCACATATTACGTG 120
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      GTTTCACTTCATATGGTTTCTCATTATTAAAATTACCCCCTGGACCGTAATTACACACGA 180
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      TTGATAGACCGTACCGTGGACAATTCGCAACTCCACATCCAATGTCTGTGGTCTTGGCCC 240
consensus_5068#1      ------------------------------------------------------------
                                                                                  

consensus_5068#0      AAGCCATTTGTGTGTAATGCAAACATTGAGGACAGTTGTTTGTATTGCAAT-TGTATAAT 299
consensus_5068#1      -----------------------------ACACGATTGATAG-ACCGTACCGTGGACAAT 30
                                                     **  *** * * *  * *   ** * ***

consensus_5068#0      TTGTGTTCATTGAACCAAGCATCCACTCCTGACTTAATGGTTGGATGGAGAGCGATATTT 359
consensus_5068#1      TCGC--------AACTCCACATCCAAT---GTCTGTGGTCTTGGATGGAGAGCTATATTT 79
                      * *         ***    ****** *   * **      ************* ******

consensus_5068#0      TGTCCAACCCAAATGAATTGTTTCGAATATCGTTTGTCGTGTTGTAGGGTGCAATTTATC 419
consensus_5068#1      TGTCCAACCCAACTGTATTGATTCGAATGTCGTTTGTCGTGACGTAAGATGCATTTGTTT 139
                      ************ ** **** ******* ************  *** * **** **  * 

consensus_5068#0      GCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTA 479
consensus_5068#1      GCCAATGATTGTGCTTGTCGAGCTAAATCGTGATTCCACTTCAATGGTGACATATATTTA 199
                      ************************************************************

consensus_5068#0      TCTGGAGGTTGTCCATCAACTGTACAATCAACTAAATCTTGACTGTATTCTCTATGCAGT 539
consensus_5068#1      GCTGGAGGTTGTCCATCAACTTTACAATCAACTAAATCTTGTCTGTATTTTCTATGCAGA 259
                       ******************** ******************* ******* ********* 

consensus_5068#0      TCAAGTAATTCTTCACTGTTTTTATCTAATTTTTTCGTTAGGATTAGCACCATAGAC--- 596
consensus_5068#1      TTGAGCAACTCTTCACTTTTCGCATCTAATCCAC-CGTTTGCATAAATCATATTAACAAG 318
                      *  ** ** ******** **   *******     **** * ** *     **  **   

consensus_5068#0      ------------------------------------------------------------
consensus_5068#1      AATCATTAGTATATGTACGACAAGTGTAACATTCTCTTCACGTAAGAACATTATGATAGT 378
                                                                                  

consensus_5068#0      -------------
consensus_5068#1      TTATTCTATTCTG 391