cluster # 5079

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Schistosoma mansoni
cluster # 5079 cluster # 5079 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5079#0 length = 408 sequences # 2

consensus_5079#1 length = 223 sequences # 1

consensusID : consensus_5079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 408
fasta sequence

                              [ACCATTTGATTGTAACGTGCGATATCTTTGTGTACAGTACGTAGAAGAATCATTGCTACCATACCAGAGAGAAAGAGAACATTACCTAAGGAATTTAAGATGGAAAACCATTGAATTCGTGTTTGAGGTAACGATTTCAGAATGTAATCCCATCGACTGGCCCAACGAATTGCATTGTTTTTCGTAAATCGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAACGTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAGCTNGTGATTTGAACTTTTTGCAGCACGAGACGACCACCATCTTCACCAAATGCGGGTTCCCATGCTTCATTTTCGCACTATGATAAAATATTTCAAATNNCTAGTGATGAACAATAGAACGTATCGT]

[+] EMBL CD090317             [ACCATTTGATTGTAACGTGCGATATCTTTGTGTACAGTACGTAGAAGAATCATTGCTACCATACCAGAGAGAAAGAGAACATTACCTAAGGAATTTAAGATGGAAAACCATTGAATTCGTGTTTGAGGTAACGATTTCAGAATGTAATCCCATCGACTGGCCCAACGAATTGCATTGTTTTTCGTAAATCGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAACGTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAGCTNGTGATTTGAACTTTTTGCAGCACGAGACGACCACCATCTTCACCAAATGCGGGTTCCCATGCTTCATTTTCGCACTATGATAAAATATTTCAAATNNCTAGTGATGAACAATAGAACGTATCGT]
[+] EMBL CD090420             [                                            tatcacCATCGCTACCATACCAGAGAGAAAGAGAACAATAACTAAGGAATTTAAGATGGAAAACCATTGAATTCGTGTTTGAGGTAACGATTTCAGAATGTAATCGCATCGACTGGCCCAACGAATTGCATTGTTTATCGTAAATCGAACGCTGTAAGTAAAAGGTATCGTTACATCT                                                                                                                                                                                          ]




>consensus_5079#0
ACCATTTGATTGTAACGTGCGATATCTTTGTGTACAGTACGTAGAAGAATCATTGCTACC
ATACCAGAGAGAAAGAGAACATTACCTAAGGAATTTAAGATGGAAAACCATTGAATTCGT
GTTTGAGGTAACGATTTCAGAATGTAATCCCATCGACTGGCCCAACGAATTGCATTGTTT
TTCGTAAATCGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAAC
GTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAGCTNGTGATTTGAACTTTTT
GCAGCACGAGACGACCACCATCTTCACCAAATGCGGGTTCCCATGCTTCATTTTCGCACT
ATGATAAAATATTTCAAATNNCTAGTGATGAACAATAGAACGTATCGT

consensusID : consensus_5079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [CGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAACGTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAAGCTGTTGATTTGAACTTTTGCAGCAACGAGACGACCACCATCTTCACCAAATGCGGTTCCCCATGCTTCATTTTCGCCCCTATGATAAATAATTTCAAAATCTAAGTGATTGAACAAATAGAACGTATCGT]

[-] EMBL CD090320             [CGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAACGTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAAGCTGTTGATTTGAACTTTTGCAGCAACGAGACGACCACCATCTTCACCAAATGCGGTTCCCCATGCTTCATTTTCGCCCCTATGATAAATAATTTCAAAATCTAAGTGATTGAACAAATAGAACGTATCGT]




>consensus_5079#1
CGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAACGTCAACGGT
TCAGCTGTGTGATCGCATTTATCAGAATTAAAGCTGTTGATTTGAACTTTTGCAGCAACG
AGACGACCACCATCTTCACCAAATGCGGTTCCCCATGCTTCATTTTCGCCCCTATGATAA
ATAATTTCAAAATCTAAGTGATTGAACAAATAGAACGTATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5079#0      ACCATTTGATTGTAACGTGCGATATCTTTGTGTACAGTACGTAGAAGAATCATTGCTACC 60
consensus_5079#1      ------------------------------------------------------------
                                                                                  

consensus_5079#0      ATACCAGAGAGAAAGAGAACATTACCTAAGGAATTTAAGATGGAAAACCATTGAATTCGT 120
consensus_5079#1      ------------------------------------------------------------
                                                                                  

consensus_5079#0      GTTTGAGGTAACGATTTCAGAATGTAATCCCATCGACTGGCCCAACGAATTGCATTGTTT 180
consensus_5079#1      ------------------------------------------------------------
                                                                                  

consensus_5079#0      TTCGTAAATCGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAAC 240
consensus_5079#1      ---------CGAACGCTGTAAGTAAAAGGGATCGTTACATCTTTGACAGTCGATTGAAAC 51
                               ***************************************************

consensus_5079#0      GTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAA-GCTNGTGATTTGAACTTTT 299
consensus_5079#1      GTCAACGGTTCAGCTGTGTGATCGCATTTATCAGAATTAAAGCTGTTGATTTGAACTTTT 111
                      **************************************** ***  **************

consensus_5079#0      TGCAGCA-CGAGACGACCACCATCTTCACCAAATGCGGGTTCCCATGCTTCATTTTCGCA 358
consensus_5079#1      -GCAGCAACGAGACGACCACCATCTTCACCAAATGCGGTTCCCCATGCTTCATTTTCGCC 170
                       ****** ****************************** * ****************** 

consensus_5079#0      C-TATGATAAAATATTTCAAATNNCTAGTGAT-GAACAA-TAGAACGTATCGT 408
consensus_5079#1      CCTATGATAAATAATTTCAAAATCTAAGTGATTGAACAAATAGAACGTATCGT 223
                      * *********  ********     ****** ****** *************