cluster # 5081

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Schistosoma mansoni
cluster # 5081 cluster # 5081 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5081#0 length = 431 sequences # 2

consensus_5081#1 length = 358 sequences # 1

consensusID : consensus_5081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 431
fasta sequence

                              [GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAGAGAAAAAGAAAAAAAATA-GGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGA]

[-] EMBL CD167852             [GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAGAGAAAAAGAAAAAAAATA GGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATG                                                                                                     ]
[+] EMBL CD075325             [                                         caaGAATATACTGAATAAGAGAAAAAGAAAAAAAATATGGGGAAATAAAATTTAAA     ATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGA]




>consensus_5081#0
GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAG
AGAAAAAGAAAAAAAATAGGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAA
ACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAAT
ATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACC
CATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAG
TGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAG
ACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACT
AGCCAGTAAGA

consensusID : consensus_5081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [GATTTCTGATAGAGAAAAGAAAAAANTATGGAAATAAATTTAAATAGTTATCACAAATAACCACCCCATACCCATATAAGTAAATCGTAAAATAAGCACTTTATCAAATAAATATACGTATAGGATATGATAATCGTTAGATTATAAAACAACGTTGTACACAAACCCATTATATCTTATCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGAA]

[-] EMBL CD081502             [GATTTCTGATAGAGAAAAGAAAAAANTATGGAAATAAATTTAAATAGTTATCACAAATAACCACCCCATACCCATATAAGTAAATCGTAAAATAAGCACTTTATCAAATAAATATACGTATAGGATATGATAATCGTTAGATTATAAAACAACGTTGTACACAAACCCATTATATCTTATCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGAA]




>consensus_5081#1
GATTTCTGATAGAGAAAAGAAAAAANTATGGAAATAAATTTAAATAGTTATCACAAATAA
CCACCCCATACCCATATAAGTAAATCGTAAAATAAGCACTTTATCAAATAAATATACGTA
TAGGATATGATAATCGTTAGATTATAAAACAACGTTGTACACAAACCCATTATATCTTAT
CAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAGTGTACACAGGATTC
TTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAAC
ATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5081#0      GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAG 60
consensus_5081#1      --------------------------------------------------GATTTCTGAT 10
                                                                          *   * * 

consensus_5081#0      AGAAAAAGAAAAAAAATAGGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAA 120
consensus_5081#1      AGAGAAAAGAAAAAANTATGG-AAATAAA--TTTAAATA------GTTAT-CACAAATAA 60
                      *** ***  ****** ** ** *******  ** *****      ***** *********

consensus_5081#0      ACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAAT 180
consensus_5081#1      CCAC--CCCATACCCATAT--AAGTAAATCGT-AAAATAAG-CACTTT-ATCAAATAAAT 113
                       ***  *************  *********** ******** ****** ***********

consensus_5081#0      ATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACC 240
consensus_5081#1      AT-ACGTA-TAGGATATGAT-AATCGTT-AGATTA-TAAAACAACGTTGT-ACACAAACC 167
                      ** ***** *** ******* ******* ****** ************** *********

consensus_5081#0      CATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAG 300
consensus_5081#1      CATTATATCTTA-TCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAG 226
                      ************ ****************************** ***********  ***

consensus_5081#0      TGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAG 360
consensus_5081#1      TGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAG 286
                      ************************************************************

consensus_5081#0      ACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACT 420
consensus_5081#1      ACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACT 346
                      ************************************************************

consensus_5081#0      AGCCAGTAAGA- 431
consensus_5081#1      AGCCAGTAAGAA 358
                      ***********