cluster # 5087

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Schistosoma mansoni
cluster # 5087 cluster # 5087 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5087#0 length = 965 sequences # 2

consensus_5087#1 length = 450 sequences # 1

consensusID : consensus_5087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 965
fasta sequence

                              [TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAAACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAGAATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTTTTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGCGTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATGATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTTTGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGTAATATTCATGTGTTTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACATACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAACAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTATTCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATGATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGTATGTATGTAATTGTATC]

[+] EMBL CD083263             [TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAAACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAGAATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTTTTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGCGTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATGATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTTTGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGT                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD076833             [                                                                                                                                                                                                                                                                                                                                                                                    TGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGTTTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACTTCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCTGGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTATGTACTTGCCAAATGTAAAAGATTATTTGTTTTGTAATATTCATGTGTTTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACATACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAACAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTATTCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATGATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGTATGTATGTAATTGTATC]




>consensus_5087#0
TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAA
ACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAG
AATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTT
TTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGC
GTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATG
ATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTT
TGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGT
TTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACT
TCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGTTTGTCATTACTTCCT
GGCCCTTGATCTTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTACTGATGTA
TGTACTTGCCAAATGTAAAAGATTATTTGTTTTGTAATATTCATGTGTTTATTTTGTTCA
TCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACATACTTGTCTTTA
TATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAACAAGGTTCTTTA
TCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTATTCATTTACATAT
TAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATGATTGATTTCCTT
TTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGTATGTATGTAATT
GTATC

consensusID : consensus_5087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CTTGAGTTGGAAGCTTGCAAGCTTCGGTCGATTATGTTCCTCAATTTTTTCTATTTCCGTTTTTACAATTTCGCTTCTTTTTCGTGCATGTTCTACACAGAAGTGTCTATGTAAAGGTCATTGTTTTTTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGATTTTAGTAGATACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTATTTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTTGAGTTCTATATACTTCGTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACCATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG]

[+] EMBL CD060600             [CTTGAGTTGGAAGCTTGCAAGCTTCGGTCGATTATGTTCCTCAATTTTTTCTATTTCCGTTTTTACAATTTCGCTTCTTTTTCGTGCATGTTCTACACAGAAGTGTCTATGTAAAGGTCATTGTTTTTTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGATTTTAGTAGATACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTATTTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTTGAGTTCTATATACTTCGTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACCATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG]




>consensus_5087#1
CTTGAGTTGGAAGCTTGCAAGCTTCGGTCGATTATGTTCCTCAATTTTTTCTATTTCCGT
TTTTACAATTTCGCTTCTTTTTCGTGCATGTTCTACACAGAAGTGTCTATGTAAAGGTCA
TTGTTTTTTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGATTTTA
GTAGATACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTATTTAAT
TAAATTATCTGATGTTTTTCGTCGAAAATTTATTTGAGTTCTATATACTTCGTAGGGTTA
GGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACCATGGCAACCAAACGAATAG
TTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTT
GGGTATAGATTAGAATTGTTTTATTTGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5087#0      TCGGCACGAGGCTATTCAACAAAACACCATGGCAACCAAACGATTAGTTTAACGAAAAAA 60
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      ACGTGACATATAACAAACAACACCATGAATTGTTTGTGTACATGTTTTGGTATAGATTAG 120
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      AATTGTTTTATTTGTCATGGTTACTGTTGGACTCTTTTTTCGCATCTTGTCAGCATTTTT 180
consensus_5087#1      --------------------------------CTTGAGTTGGAAGCTTGCAAGCTTCGGT 28
                                                        *   ** * * ****  *** *   *

consensus_5087#0      TTGTTAACTTACTTCGTTTACTTTATTCCTTGAGATTTTTCTGATCAAATAAGCTGGCGC 240
consensus_5087#1      CGATTATGTTCCTCAATTTTTTCTATTTCC----GTTTTTACAATTTCGCTT-CTTTTTC 83
                         ***  ** **   ***  * **** *      *****   **        **    *

consensus_5087#0      GTGTATGTACACGATAGTGTAGTATGTAGGTAACTTTTCTTCCTCACCGTCAATGTCATG 300
consensus_5087#1      GTGCATGTTCT--ACACAGAAGTGTCTATGTA-------------AAGGTCATTGTTTT- 127
                      *** **** *   * *  * *** * ** ***             *  **** ***  * 

consensus_5087#0      ATAGTGTTGATTCTCTCATGGATTTGTATGTTTGTATACATCACTTATGTTAGAGAGTTT 360
consensus_5087#1      ----TTGTGATTATCCCATGAATGTCTACTTCTTCTTTGCTTATTTATTTGA-----TTT 178
                          *  ***** ** **** ** * **  * *   *   * * **** * *     ***

consensus_5087#0      TGTTAAATCTGATGAGCATCAAATGAGTAGGGTAATTTCTTCTTTTTTTTTAAGAATAGT 420
consensus_5087#1      TAGTAGAT---ACACACACTTTGTATGTAACAATTCTGCTGGGTTTTTTTTAAATTCTAT 235
                      *  ** **   *    **     *  ***       * **   **********      *

consensus_5087#0      TTTATATGTATGTAGGATCAATTTGTCCGTAGGCTTTTTTTCTATTCCATTTCATGTACT 480
consensus_5087#1      TTAATTAAATTATCTGATGTTTTTCGTCGAAAATTTATTT------GAGTTCTATATACT 289
                      ** **     * *  ***   ***   ** *   ** ***         **  ** ****

consensus_5087#0      TCTGTTTAACATACAGTAAGAAAATATTTCACTTAACTATCTTGT--TTGTCATTACTTC 538
consensus_5087#1      TC--------GTAGGGTTAGGGGGTAAACCGTTTGACTGCTTTGTATTCAACAAAACACC 341
                      **         **  ** **    **   *  ** ***   ****  *   **  **  *

consensus_5087#0      CTGGCCCTTGATC------TTTATGGAGATTCGTAGCACTTGTATTAATCGGTCTAATTA 592
consensus_5087#1      ATGGCAACCAAACGAATAGTTTAACGAAAAAAAAGTGACATATAACAAACAACACCATGA 401
                       ****     * *      ****  ** *        ** * **  ** *      ** *

consensus_5087#0      CTGATGTATGTACTTGCC-AAATGTAAA---AGATTATTTGTTTTGTAATATTCATGTGT 648
consensus_5087#1      ATTGTTTGTGTACATGTTTGGGTATAGATTAGAATTGTTTTATTTGTCG----------- 450
                       *  * * ***** **      * ** *     *** ***  *****             

consensus_5087#0      TTATTTTGTTCATCTCTTTCCGGGTAAGAACAAACACATACATACATATGTGTGAACACA 708
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      TACTTGTCTTTATATATCTGATCTACGTGTCATATCTACTTATCATCACAAAAATATAAA 768
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      CAAGGTTCTTTATCTTCCATTGTGTCAAGTCCTCAGGAGTCTCTTCTTATATATGTTTAT 828
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      TCATTTACATATTAGTAAAGTGGTTCGGTATTGTTTGTTTGTTTTCTTCTTCACCAGATG 888
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      ATTGATTTCCTTTTTTTCATCGTTACTGCCATGAATATTGATCATATTTTGTATGTATGT 948
consensus_5087#1      ------------------------------------------------------------
                                                                                  

consensus_5087#0      ATGTATGTAATTGTATC 965
consensus_5087#1      -----------------