cluster # 5089

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Schistosoma mansoni
cluster # 5089 cluster # 5089 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5089#0 length = 594 sequences # 2

consensus_5089#1 length = 353 sequences # 1

consensusID : consensus_5089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATACTGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGGTGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAACAGGTTCTACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCGTATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACAAAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGCTGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC]

[+] EMBL CD152318             [CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATACTGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGGTGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAACAGGTTCTACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCGTATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATT                                                                                                                                                                             ]
[+] EMBL CD139886             [                                                                                                                                                                                                                                                                                                                                                                GGCTACAAAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACAAAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGCTGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC]




>consensus_5089#0
CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATAC
TGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGG
TGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAACAGGTTCTA
CTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCGT
ATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTAG
CTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAA
AACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAAT
TAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACAA
AAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGCT
GTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC

consensusID : consensus_5089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AAAGTCCTTTGCTCAATTGAAAGATTCATATGCCACAGCGGATACACAATTGCAGACAGCTTATTCTGAACGAGACGATGCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAAACTCTACAAACAGTTTTAGACAATTTTCAGCGCAATCAGGAAGCTACTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC]

[+] EMBL AI976813             [AAAGTCCTTTGCTCAATTGAAAGATTCATATGCCACAGCGGATACACAATTGCAGACAGCTTATTCTGAACGAGACGATGCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAAACTCTACAAACAGTTTTAGACAATTTTCAGCGCAATCAGGAAGCTACTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACAAAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC]




>consensus_5089#1
AAAGTCCTTTGCTCAATTGAAAGATTCATATGCCACAGCGGATACACAATTGCAGACAGC
TTATTCTGAACGAGACGATGCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGA
TTTAAAAGAGAGTTTAAAAACTCTACAAACAGTTTTAGACAATTTTCAGCGCAATCAGGA
AGCTACTCTTCTAGCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAA
AGAATTGGCTACAAAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGA
ATTAACCAATGAATTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5089#0      CACAGAATTGTTACTGGCCTTTCTAGAAGAAGAATCATCTCCCCGTATCAACGATTATAC 60
consensus_5089#1      ------------------------------------------------------------
                                                                                  

consensus_5089#0      TGCCTATGGATTATTATACACCTGATATGGTCAGTTCAACGAATAATTCCAGAAAGCAGG 120
consensus_5089#1      ----------------------------------------AAAGTCCTTTGCTCAATTGA 20
                                                               **    *      *   * 

consensus_5089#0      TGAACACATGTAATACGGAAGATGAGAAGTATCCTGTTAGCACAATTATAAC-AGGTTCT 179
consensus_5089#1      AAGATTCATATGCCACAGCGGATACACAAT-TGCAGACAGCTTATTCTGAACGAGACGAT 79
                         *  *** *   ** *  ***    * * * * *  ***  * *   *** **    *

consensus_5089#0      ACTTCACTATCCAATCCTCCTAAATCTGATAATGATTCAAATTTATCAGATCATAAACCG 239
consensus_5089#1      GCTTTAAAACACTTGGAGGCTAGTCGACGTGAAGTTCTTGATTTAAAAGAGAGTTTAAAA 139
                       *** *  *  *       ***       * * * *    *****  ***   *  *   

consensus_5089#0      TATTTCTATATGCTTTAACAATGACTACATCTAATTTATTTTCATTAAAGTTTTCTTCTA 299
consensus_5089#1      ACTCTACAAACAGTTTTA----GACAATTTTCAGCGCAA--TCAGGAAGCTACTCTTCTA 193
                        * *  * *   *** *    *** *  *  *    *   ***  **  *  *******

consensus_5089#0      GCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACA 359
consensus_5089#1      GCTGAAACGGAACATCTTCGAACTGAACTTAATCGAACTATTCAAAAAGAATTGGCTACA 253
                      ************************************************************

consensus_5089#0      AAACAAGAGATGGAACAATTGAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAA 419
consensus_5089#1      AAACAAGAGATGGAACAATTAAATAAATCACTTATCAGCTATCAAGAATTAACCAATGAA 313
                      ******************** ***************************************

consensus_5089#0      TTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAACAAATTCTTCGACTTGAAACA 479
consensus_5089#1      TTAAATCAAATAAAAAGTGTTAACCAACAATTACGTGAAC-------------------- 353
                      ****************************************                    

consensus_5089#0      AAAGTAAAAAAATCGTGATACAGAAAATAATGGACTTCGTGATCGTCTTGCTAAAATGGC 539
consensus_5089#1      ------------------------------------------------------------
                                                                                  

consensus_5089#0      TGTAGATACAGATTCACGAATTGATAAAGTACTAATTAAGAACTTGCTACTTAGC 594
consensus_5089#1      -------------------------------------------------------