cluster # 5098

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Schistosoma mansoni
cluster # 5098 cluster # 5098 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5098#0 length = 633 sequences # 1

consensus_5098#1 length = 613 sequences # 2

consensusID : consensus_5098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAAATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTATGAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAACGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGAATATGACG]

[+] EMBL CD151664             [AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAAATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTATGAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAACGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGAATATGACG]




>consensus_5098#0
AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAA
ATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTAT
GAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTG
CATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACAC
CAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCA
TCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAA
CGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTC
TTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACA
ATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGA
TTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGT
TAGTTCATTTTGTTTAGCTATGAGAATATGACG

consensusID : consensus_5098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 613
fasta sequence

                              [GCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCACTTAATAGGCATTTTTCTACCTTGTTCAGCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATCTAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGATCCT]

[-] EMBL CD115977             [GCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCACTTAATAGGCATTTTTCTACCTTGTTCAGCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACAATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGTTAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCAT                                                                 ]
[+] EMBL CD135860             [                                                                                                                                                                                                                                                                                                                                                                   AACTGTGTTATGGTTAGCGCAGTGTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAATTTTATGATATGTGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATCTAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGATCCT]




>consensus_5098#1
GCGAACACCACGAGCAATTTGTTCTACAGCTTCTGCATTAGTTAAATTTGAAAATGGTTT
AACTCCTTNTGATAGAATTTCCCAGATACAAACACCAAACATCCAAACATCACTTGCTGA
ACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCATCCACTTAATAGGCATTTTTCTACC
TTGTTCAGCTTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAA
TTTTACACAATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACA
CTTCTTTGATTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTG
TGTTATGGTTAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGC
ATATTCCATAACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATG
TGGATGATCAAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATA
TGATGCATCTAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCT
ACGATATGATCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5098#0      AAGCTGAAGTTGATTTATATTGTACGATTAATTCTCTTATTCTAGGTTTAAGCATTGAAA 60
consensus_5098#1      ------------------------------------------------------------
                                                                                  

consensus_5098#0      ATGTTGGACGTAAAGTAGGATTAGCATTCCAACACTGTAGTAAAATTTCATATAAACTAT 120
consensus_5098#1      ------------------------------------------------------------
                                                                                  

consensus_5098#0      GAGGACATTTATCTGGTCTTTCCAGGCGAACACCACGAGCAATTTGTTCTACAGCTTCTG 180
consensus_5098#1      -------------------------GCGAACACCACGAGCAATTTGTTCTACAGCTTCTG 35
                                               ***********************************

consensus_5098#0      CATTAGTTAAATTTGAAAATGGTTTAACTCCTTTTGATAGAATTTCCCAGATACAAACAC 240
consensus_5098#1      CATTAGTTAAATTTGAAAATGGTTTAACTCCTTNTGATAGAATTTCCCAGATACAAACAC 95
                      ********************************* **************************

consensus_5098#0      CAAACATCCAAACATCACTTGCTGTACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCA 300
consensus_5098#1      CAAACATCCAAACATCACTTGCTGAACTAAAACGGCGTTGATGTAGGCTTTCTGGAGCCA 155
                      ************************ ***********************************

consensus_5098#0      TCCATTTAATAGGCATTTTTCTACCTTGTTCAGCTCTTGGATGCAGGTACGTCCGGTTAA 360
consensus_5098#1      TCCACTTAATAGGCATTTTTCTACCTTGTTCAGCT------------------------- 190
                      **** ******************************                         

consensus_5098#0      CGAGTCCAAACTAGGACGAAACGAGCGTCCTGGATTTCACTGCTGGCCACCACCCATCTC 420
consensus_5098#1      ------------------------------------------------------------
                                                                                  

consensus_5098#0      TTGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACA 480
consensus_5098#1      -TGGAAGTCATTTTTATCTGTTAAAATCAGTGACATTCCGAAATCGGCTAATTTTACACA 249
                       ***********************************************************

consensus_5098#0      ATCTGGTCTTGAGACAAGAATATTTCTAGCAGCTATATCTCTGTGAACACACTTCTTAGA 540
consensus_5098#1      ATCTGGTCTTGAGACAAGAATATTTCCAGCAGCTATATCTCTGTGAACACACTTCTTTGA 309
                      ************************** ****************************** **

consensus_5098#0      TTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGT 600
consensus_5098#1      TTCTAGACAGGCTAAAGCGGTTACAATTTGATAGGAGTATGTAAGTAACTGTGTTATGGT 369
                      ************************************************************

consensus_5098#0      TAGTTCATTTTGTTTAGCTATGAGAATATGACG--------------------------- 633
consensus_5098#1      TAGTTCATTTTGTTTAGCTATGAGATAATGACGTAACTCTCCCAAAGGAGCATATTCCAT 429
                      *************************  ******                           

consensus_5098#0      ------------------------------------------------------------
consensus_5098#1      AACTAACCAAATTGGTTCATCAGAACATACACCAAATAACTTTATGATATGTGGATGATC 489
                                                                                  

consensus_5098#0      ------------------------------------------------------------
consensus_5098#1      AAATTCTCCCAGTATATGCGCTTCCTCTAAAAATCGCTTTCTTTCTTCATATGATGCATC 549
                                                                                  

consensus_5098#0      ------------------------------------------------------------
consensus_5098#1      TAGTTTACATGTTTTCACTGCAACCAATAATGGATCAAAATTAGGTTTTCTACGATATGA 609
                                                                                  

consensus_5098#0      ----
consensus_5098#1      TCCT 613