cluster # 5099

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5099 cluster # 5099 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5099#0 length = 256 sequences # 1

consensus_5099#1 length = 156 sequences # 2

consensusID : consensus_5099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGATTCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGTTTTTATTTATTCTTAA]

[+] EMBL CD159086             [GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGATTCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGTTTTTATTTATTCTTAA]




>consensus_5099#0
GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATG
CGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTG
ATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGAT
TCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGT
TTTTATTTATTCTTAA

consensusID : consensus_5099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 156
fasta sequence

                              [AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA]

[+] EMBL CD198010             [AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA]
[+] EMBL CD198221             [                  ATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGAGTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA]




>consensus_5099#1
AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATGCGTGTTCTG
TCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTGATTTTCAAC
TCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5099#0      GTGTACTTATGCGTTTACTGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATG 60
consensus_5099#1      ---------AACAGTGCCCGTTAACTAATATTTATGAGTGATTATGGATGGGCTGTGATG 51
                                 *  *  * *****************************************

consensus_5099#0      CGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTG 120
consensus_5099#1      CGTGTTCTGTCAATATGTATTGTTTATTTAGCTAAACTTTAGTTTATTTCGAATACGTTG 111
                      ************************************************************

consensus_5099#0      ATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGACTGTCACTTATTGAT 180
consensus_5099#1      ATTTTCAACTCCTATCCTAATCCCTCTCATCCTCAAACTGCCAGA--------------- 156
                      *********************************************               

consensus_5099#0      TCATTCTATGATAATACACCCTATTGTATACATTCTTCCTTACCAAGTTTTTACCTCAGT 240
consensus_5099#1      ------------------------------------------------------------
                                                                                  

consensus_5099#0      TTTTATTTATTCTTAA 256
consensus_5099#1      ----------------