cluster # 5152

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Schistosoma mansoni
cluster # 5152 cluster # 5152 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5152#0 length = 338 sequences # 2

consensus_5152#1 length = 176 sequences # 1

consensusID : consensus_5152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 338
fasta sequence

                              [AGCCACCGCATTCCGAACAAAACNAACTCGCTAAAAAAACGCCAACCAGAAAAAAATTACTCAAACCATTTACCTATATGGTAACTATACAAATTNGAAACATT-GTTGTATATTACCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTGGTTGTAATAATCCTGATATGATTGAACAGAAACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGACGCAAATACAAAGAATTGTGAGCTTTACTAATCTGAAATGAGTTTAAAGAACAGAAAAAAAGGAACAAACCCATACTGAAGATCAATTAAATTGTGCTTTATTACGT]

[+] EMBL CD085633             [AGCCACCGCATTCCGAACAAAACNAACTCGCTAAAAAAACGCCAACCAGAAAAAAATTACTCAAACCATTTACCTATATGGTAACTATACAAATTNGAAACATT GTTGTATATTACCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTGGTTGTAATAATCCTGATATGATTGAACAGAAACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGACGCAAATACAAAGAATTGTGAGCTTTACTAATCTGA                                                                       ]
[+] EMBL CD085638             [                                                                                    CTGTACAAATATGAAACATTGGGTG GTATTACCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTGGTTGTAATAATCCTGATATGATTGAACAGAAACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGACGCAAATACAAAGAATTGTGAGCTCTACTAATCTGAAATGAGTTTAAAGAACAGAAAAAAAGGAACAAACCCATACTGAAGATCAATTAAATTGTGCTTTATTACGT]




>consensus_5152#0
AGCCACCGCATTCCGAACAAAACNAACTCGCTAAAAAAACGCCAACCAGAAAAAAATTAC
TCAAACCATTTACCTATATGGTAACTATACAAATTNGAAACATTGTTGTATATTACCTGA
TAAACTTCAGAGTAAAGAAGTGAAAAAGCTGGTTGTAATAATCCTGATATGATTGAACAG
AAACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGACGCAAATAC
AAAGAATTGTGAGCTTTACTAATCTGAAATGAGTTTAAAGAACAGAAAAAAAGGAACAAA
CCCATACTGAAGATCAATTAAATTGTGCTTTATTACGT

consensusID : consensus_5152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [TACNAGAAACCATATTAATTTTTTTGGTCATTTCATCAGGAGTTTTGCGTAAATNAAATACCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTAATTGTAATAATCCTGATATGATTGAANAGANACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGA]

[-] EMBL AA819927             [TACNAGAAACCATATTAATTTTTTTGGTCATTTCATCAGGAGTTTTGCGTAAATNAAATACCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTAATTGTAATAATCCTGATATGATTGAANAGANACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGA]




>consensus_5152#1
TACNAGAAACCATATTAATTTTTTTGGTCATTTCATCAGGAGTTTTGCGTAAATNAAATA
CCTGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTAATTGTAATAATCCTGATATGATTG
AANAGANACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5152#0      AGCCACCGCATTCCGAACAAAACNAACTCGCTAAAAAAACGCCAACCAGAAAAAAATTAC 60
consensus_5152#1      ------------------------------------------------------TACNAG 6
                                                                             *  * 

consensus_5152#0      TCAAACCATTTACCTATATGGTAACTATACAAATTNGAAACATTGTT---GTATATTACC 117
consensus_5152#1      AAACCATATTAATTTTTTTGGTCATTTCA----TCAGGAGTTTTGCGTAAATNAAATACC 62
                        *    *** *  * * **** * *  *    *  * *   ***      *  * ****

consensus_5152#0      TGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTGGTTGTAATAATCCTGATATGATTGAA 177
consensus_5152#1      TGATAAACTTCAGAGTAAAGAAGTGAAAAAGCTAATTGTAATAATCCTGATATGATTGAA 122
                      *********************************  *************************

consensus_5152#0      CAGAAACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGACGCAAA 237
consensus_5152#1      NAGANACAACCCATTATAATGTAAATCATTTCTGGTCGATTAATACTTAAAAGA------ 176
                       *** *************************************************      

consensus_5152#0      TACAAAGAATTGTGAGCTTTACTAATCTGAAATGAGTTTAAAGAACAGAAAAAAAGGAAC 297
consensus_5152#1      ------------------------------------------------------------
                                                                                  

consensus_5152#0      AAACCCATACTGAAGATCAATTAAATTGTGCTTTATTACGT 338
consensus_5152#1      -----------------------------------------