cluster # 5164

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5164 cluster # 5164 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5164#0 length = 710 sequences # 1

consensus_5164#1 length = 574 sequences # 2

consensusID : consensus_5164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTCTACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCCTAATGATTTTCACGCTTTCTCAACAGATGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGGGATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA]

[+] EMBL CD144719             [TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTCTACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCCTAATGATTTTCACGCTTTCTCAACAGATGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGGGATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA]




>consensus_5164#0
TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTC
TACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCC
TAATGATTTTCACGCTTTCTCAACAGATGATCAAGCTTTAATTATCCTTGACCATTTTTT
GGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCT
TAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAA
AAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTAT
TTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATC
TTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATC
TACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGC
TCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTAG
TTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGGG
ATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA

consensusID : consensus_5164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [TCATTTAAAAATCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGGGATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC]

[+] EMBL CD115297             [TCATTTAAAAATCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGGGATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC]
[+] EMBL CD115299             [                                TTAATTGTCCTTGACCATTTTTTGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGAAAT                                             ]




>consensus_5164#1
TCATTTAAAAATCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTTTGGAGA
ACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTCTTAATT
TCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATAAAAGTA
CGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTATTTCAC
AGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCATCTTCGT
CACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGATCTACTG
TTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCGCTCGAA
TGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAAGTTGAAACTCTAGTTGGTG
TTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGGGATGCAC
TGCACCGACTAAAGTGTCTGGGAATTGATCACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5164#0      TCGTGATATTATTAACCTACTATGCAATTTAATCCTAACAAATGCCACTCGAAGTATTTC 60
consensus_5164#1      ------------------------------------------------------------
                                                                                  

consensus_5164#0      TACCAGTTTTTCCATATCAGATAGCTTGTCTAATATTGGCATTAGTGCGGATTGTCTCCC 120
consensus_5164#1      ------------------------------------------------------------
                                                                                  

consensus_5164#0      TAATGATTTTCACGCTTTCTCAACA-GATGATCAAGCTTTAATTATCCTTGACCATTTTT 179
consensus_5164#1      ---TCATTTAAAAA---TCCCGGCACGTTGATCAAGCTTTAATTATCCTTGACCATTTTT 54
                         * ****  *     ** *  ** * ********************************

consensus_5164#0      TGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTC 239
consensus_5164#1      TGGAGAACTTACGAAGTGAATTCCCATCGTATGTGTATCGTGTATCGGAATGGAATTCTC 114
                      ************************************************************

consensus_5164#0      TTAATTTCCTACGTCATGCATTGAGATGGCTCTGTATTTATAGTCGACATGATAACAATA 299
consensus_5164#1      TTAATTTCCTACGTCATGCATTGATATGGCTCTGTATTTATAGTCGACATGATAACAATA 174
                      ************************ ***********************************

consensus_5164#0      AAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTA 359
consensus_5164#1      AAAGTACGTGTTGGCCATTGTCTCGTCTCCGAAAGTATTTGGTTTTTGGTGAGGAAATTA 234
                      ************************************************************

consensus_5164#0      TTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCAT 419
consensus_5164#1      TTTCACAGCTGACAGCAATTACCTCGAGTCAAAAATCTCACTCGAAAATAGTCCATTCAT 294
                      ************************************************************

consensus_5164#0      CTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGAT 479
consensus_5164#1      CTTCGTCACCTGTTTTATTATCTATCCGAAACAACCAAACAATTTCTCAGTCTTCAGGAT 354
                      ************************************************************

consensus_5164#0      CTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCG 539
consensus_5164#1      CTACTGTTAACGTTGGCAATATGGACACTGCTTTAACTCAGATCATGAGACTTGTACTCG 414
                      ************************************************************

consensus_5164#0      CTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACANAGNTGAAACTCTA 599
consensus_5164#1      CTCGAATGCATACGTCTTTAGGAAATCTGACCCAGTTGGGTGTACAA-GTTGAAACTCTA 473
                      **********************************************  * **********

consensus_5164#0      GTTGGTGTTTTAACTGAGATTCTCGGCAGTTCAAGGTCATCCATCTATCAAGAAAATCGG 659
consensus_5164#1      GTTGGTGTTTTAACTGAGATTCTCAGCAGTTCAGGGTCATCCATCTATCAAGATATCGGG 533
                      ************************ ******** ******************* *   **

consensus_5164#0      GATGCACTGCACCGACTAAAGTGTCTGGGAAATGATCACCAACCGCTGGTA 710
consensus_5164#1      GATGCACTGCACCGACTAAAGTGTCTGGGAATTGATCACCC---------- 574
                      ******************************* ********