cluster # 5179

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Schistosoma mansoni
cluster # 5179 cluster # 5179 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5179#0 length = 506 sequences # 2

consensus_5179#1 length = 414 sequences # 1

consensusID : consensus_5179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 506
fasta sequence

                              [ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAATGATATTACTGAATACAGTATTATATAATATTGTTTATTGTAATATCCGTTTATATCGAAAATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCATAACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCC-ACTATGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTAATCATTACATTCTTTTTCATCTAAAATATCATTCAATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACTAAACTGTTACCAATGTAAATTATGCTGAAAC]

[+] EMBL CD072988             [ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAATGATATTACTGAATACAGTATTATATAATATTGTTTATTGTAATATCCGTTTATATCGAAAATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCATAACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCC ACTATGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTAATCATTACATTCTTTTTCATCTAAAATATCATTCAATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACTAAACTGTTACCAATGTAAATTATGCTGAAAC]
[-] EMBL AA883030             [                                                                                                                                                                                                                 atgcttgTTG TCAG CCT ACCTCCTGCTATGTACAGAATAGATTCTACAATTAGCAATGCTTCATCTTCCAAAAGATCAGTGAATGAAACACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTTCATGTCTTCTAATTTATCATTACATTCTTTTTCATCTAGAATATCATTCGATTTCAAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAGATAACA                                       ]




>consensus_5179#0
ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAAT
GATATTACTGAATACAGTATTATATAATATTGTTTATTGTAATATCCGTTTATATCGAAA
ATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCATA
ACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCCACTAT
GTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAAC
ACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTTT
CATGTCTTCTAATTAATCATTACATTCTTTTTCATCTAAAATATCATTCAATTTCAAATG
TGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACTAAACT
GTTACCAATGTAAATTATGCTGAAAC

consensusID : consensus_5179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [CGCAAAATGTTCTGGGAATTAGAAAATCAAAAAGACTGCCCATTACATATATCCGCTCCATTTTTGGATCCATCAACAACAAATGATGATATCAGTTTACCTGACGAAAAAAATGATCCCACAGTAGAGAATGACTCAGACGATAGTAAACAGAATATAGATGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAAGTTGAAACAAGAAGAGAAAACATCAGCTCTATATAAATCACATGAAGAATCAAAAGATTCAAATGAAGATTCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTCAAAGTTAACTTTCTTCCATGTAACAGTTTTTTAGACTTACCTATAAGATACCGATCTTTATTTCTCAAAAGTACC]

[+] EMBL CD078519             [CGCAAAATGTTCTGGGAATTAGAAAATCAAAAAGACTGCCCATTACATATATCCGCTCCATTTTTGGATCCATCAACAACAAATGATGATATCAGTTTACCTGACGAAAAAAATGATCCCACAGTAGAGAATGACTCAGACGATAGTAAACAGAATATAGATGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAAGTTGAAACAAGAAGAGAAAACATCAGCTCTATATAAATCACATGAAGAATCAAAAGATTCAAATGAAGATTCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTCAAAGTTAACTTTCTTCCATGTAACAGTTTTTTAGACTTACCTATAAGATACCGATCTTTATTTCTCAAAAGTACC]




>consensus_5179#1
CGCAAAATGTTCTGGGAATTAGAAAATCAAAAAGACTGCCCATTACATATATCCGCTCCA
TTTTTGGATCCATCAACAACAAATGATGATATCAGTTTACCTGACGAAAAAAATGATCCC
ACAGTAGAGAATGACTCAGACGATAGTAAACAGAATATAGATGTTGAAAATAGAAATTCT
GATGACTACATATTCATGAAGTCAGAAAAGTTGAAACAAGAAGAGAAAACATCAGCTCTA
TATAAATCACATGAAGAATCAAAAGATTCAAATGAAGATTCATTTACAAAACAATTTGAC
AATACAGAATATGTTCCATTGGATATTGCAAATACATTCAAAGTTAACTTTCTTCCATGT
AACAGTTTTTTAGACTTACCTATAAGATACCGATCTTTATTTCTCAAAAGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5179#0      ATATAAATATATTTATAAAAGTAAATTGTATGTTTCAATATAAATATTCAATTTATGAAT 60
consensus_5179#1      -----------------------------------------------------CGCAAAA 7
                                                                               ** 

consensus_5179#0      GATATTACTGAATACAGTATTATATAATATTGTTTATTGTA-ATATCCGTTTATATCGAA 119
consensus_5179#1      TGTTCTGGGAATTAGAAAATCA-AAAAGACTGCCCATTACATATATCCGCTCCATTTTTG 66
                        *  *    * ** *  ** * * ** * **   ***  * ******* *    *    

consensus_5179#0      AATATAAATGATGATCTTCCATTGGTTTTATTTCTTTAACAGACTCGAAACCAAAATCAT 179
consensus_5179#1      GATCCA-----TCAACAACAAATGATGATATCAGTTTACCTGA--CGAAA--AAAATGAT 117
                       **  *     * * *  * * ** *  ***   **** * **  *****  ***** **

consensus_5179#0      AACCCATTTGACTAACATTTTCACAATAGGCTTTGATTTGTTCGGACCTAACCTCCACTA 239
consensus_5179#1      CCCACAGTAGAGAATGACTCAGACGATAG--------TAAACAGAATATAG--------A 161
                        * ** * **  *  * *   ** ****        *     * *  **         *

consensus_5179#0      TGTACAAAATAAATTCTACAATTAGCAATGCTTCATCTTCCAAAAAATCAGTGAATGAAA 299
consensus_5179#1      TGTTGAAAATAGAAATTCTGATGACTACATATTCATGAAGTCAGAAAA-GTTGAAACAAG 220
                      ***  ****** *   *   ** *  *    *****      * ***    ****  ** 

consensus_5179#0      CACTGGATATATCAGTATTAAATAAATAATTTTCTAAAGTGCTTTCATTGGATTTAGCTT 359
consensus_5179#1      AAGAGAAAACATCAGCTCTATATAAATCACATGA-AGAATCAAAAGATTCAAATGAAGAT 279
                       *  * * * *****   ** ****** *  *   * * *      ***  * * *   *

consensus_5179#0      TCATGTCTTC--TAATTAATCATTACAT--TCTTTTTCATCTAAAATATCATTCAATTTC 415
consensus_5179#1      TCATTTACAAAACAATTTGACAATACAGAATATGTTCCATTGGATATTGCAAATACATTC 339
                      **** *       ****   ** ****   * * ** ***   * **  **   *  ***

consensus_5179#0      AAATGTGATCCATTGTCTTTTTTACATTCTCTTTTATGCAGATCAAATAACAAATGAACT 475
consensus_5179#1      AAA-GTTAACTTTCTTCCATGTAACAGTT--TTTTAGACTTACCTATAAGATACCGATCT 396
                      *** ** * *  *  **  * * *** *   *****  *  * * *  *   *  ** **

consensus_5179#0      AAACTGTTACCAATGTAAATTATGCTGAAAC 506
consensus_5179#1      TTATT-TCTCAAAAGTACC------------ 414
                        * * *  * ** ***