|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence
[CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT]
[+] EMBL CD084346 [CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATT ]
[-] EMBL CD075343 [ CTGGTGCTTGTATAAATAATGATAAAAAGAATTTATCATCTCCATTTATAGCACGCTACGTCAATTGGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAGCTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATTTTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAATGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTTCTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAAAGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTACCTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGTTGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCATAATAATAAAATACAATTTCATATT]
consensusID : consensus_5196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT]
[+] EMBL CD081520 [CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGGTCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGTTTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAACTGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCATCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGCTTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTTGGGCAAACAAAATGCCCAATCAACATATCCCCCAAATGTTTGGTTAATTGGGAAGCCCCTTCTCCCTTTTCCCTCCCCGAAGGGGTCTTTTGAAAATAATTCAAGAAATTTTTACCCATTGCTATGGCTGGCCCAAATTTTTTATTGATAAGGGGTCCAGAAACGCGCCCAACACCTTATCCCCATTTGTGGGCCATTTTTTTTTAAAGGCTTGTTTTTCACCTTTTTAAACCGGGCAAAAAATTTGTTTTCACCTTTTGTTCTTAAAAGGCTTCCTTTCACCAAACAAAAATTTCCTTTTTTTTTGTTATTTAGAGAACCCCCTTTTGGGGAAAAGCTTAATTTTGTACCAAAAAAAACAATCGGGGAGTGTGAAAAAAAAACATCTCGGCCGGAAAAATTAACGGCGGGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5196#0 ------------------------------------------------------------
consensus_5196#1 CCAGNAATTCGGCACGAGGGNAGCATTGAAAGCCATAAATGGTTCTAATGTCGTCGAAGG 60
consensus_5196#0 -----------------------CGAGGCGGCACGAGGAGACTTTTGAATTTCCTATTGT 37
consensus_5196#1 TCTAGGCCCTCGATTTAACCGTAACAGGTGGCCTAATAAGACTTTTGAATTTCCTATTGT 120
*** *** * **********************
consensus_5196#0 TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 97
consensus_5196#1 TTGGAACAAAGGAAGCTTCTATATGGCATTAAAACGAGAGTTCATACAATTTTATAAAAC 180
************************************************************
consensus_5196#0 TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 157
consensus_5196#1 TGATTTAAAGTCACAGAAAATACTTGATGCGATCAAATCTGAGAAACATTTACAAAAGCA 240
************************************************************
consensus_5196#0 TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 217
consensus_5196#1 TCCAGATGAATTATATTTTCCTACTTTAAATCATAATCCCCAATTTGGTGCCCCTGGTGC 300
************************************************************
consensus_5196#0 TTGTATAAATAATGATAAAAAGAATTTAT-CATCTCCATTTATAGCACGCTACGTCAATT 276
consensus_5196#1 TTGTATAAATAATGATAAAAAGAATTTATACATCTCCACTTATAGCACGCTCCCCCATTT 360
***************************** ******** ************ * ** **
consensus_5196#0 GGGGCAAGCAAAATTGCCTAAGTCAACATACTCGTCGAACTGTTTGTATAATTGGTAAAG 336
consensus_5196#1 GGG-CAAACAAAAT-GCCCAA-TCAACATATCCCCCAAA-TGTTTGGTTAATTGGGAAGC 416
*** *** ****** *** ** ******** * * ** ****** ******* **
consensus_5196#0 CTCATCTACCATTTATACCATCACGAATGGAGTTCTTTGTAAATAAATTTCAAGAAAATT 396
consensus_5196#1 CCCTTCTCCCTTTT---CCCTCCCCGAAGGGGTCTTTTGAAAATAA--TTCAAGAAATTT 471
* * *** ** *** ** ** * * ** ** **** ****** ********* **
consensus_5196#0 TTCAACCAATTGCATATGACTGTACAGAATATTATATAATGAATAAAGTAATCAAAGAAA 456
consensus_5196#1 TT--ACCCATTGC-TATGGCTGGCCCAAATTTTTTATTG---ATAAGGGGTCCA--GAAA 523
** *** ***** **** *** * *** ** *** **** * ** ****
consensus_5196#0 TGCAAACAAAACAACTAGATCCAAATTTTGATGTAACATTTTATTCTAGACTGCATTGTT 516
consensus_5196#1 CGCGCCCAACACCTT---ATCCCCATTT--GTGGGCCATTTTTTTTTAAA--GGCTTGTT 576
** *** ** **** **** ** ****** ** ** * * *****
consensus_5196#0 CTAGCAATCATATTTAATACTGAGTCAAAGATTTATGTTAATCAGTATTTGTTCTTATAA 576
consensus_5196#1 TT--TCACC-TTTTTAA-ACCGGGCAAAAAATTTGTTTTCACCT---TTTGTTCTTAAAA 629
* * * * ***** ** * * *** **** * ** * * ********** **
consensus_5196#0 AGTTCTATCATTTACAAGAGTCAAATATATCGCTTTTATTCTTGTTTATCTGATGATTAC 636
consensus_5196#1 GGCTT--CCTTTCACCAAA--CAAAAATTT--CCTTTTTTTTTGTT-ATTTAGAGA--AC 680
* * * ** ** * * **** ** * * *** ** ***** ** * ** **
consensus_5196#0 CTTATTTTGGGCAAATTTGCATAATTTTTGTAACTAAGATGAATCGTATAGGTGATATGT 696
consensus_5196#1 CCCCTTTTGGGGAAAA--GCTTAATTTT-GTACCAAAAA--AAACAATCGGGGAGTGT-- 733
* ******* *** ** ******* *** * ** * ** * ** * *
consensus_5196#0 TGAAAAGTTAATACATTTACTGTACAGTTAAATATTTAACGTTATGTATATACCTATCAT 756
consensus_5196#1 -GAAAAAAAAACATCTCGGCCGGAAAAATTAACGGC-GGGGT------------------ 773
***** ** * * * * * * * ** **
consensus_5196#0 AATAATAAAATACAATTTCATATT 780
consensus_5196#1 ------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||