cluster # 5214

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Schistosoma mansoni
cluster # 5214 cluster # 5214 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5214#0 length = 473 sequences # 2

consensus_5214#1 length = 272 sequences # 1

consensusID : consensus_5214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCATAACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACTTCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC]

[+] EMBL CD196015             [GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCATAACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACC                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD177896             [                             tgGAAGGCCGAAAT CTTCGCGTTCTTGCATAACTCCTTGTTGACAACAGATTTCTTCAAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGTTTATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACTTCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC]




>consensus_5214#0
GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCAT
AACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCAC
GGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATG
TGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTT
AACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGA
TTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATT
TCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACT
TCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC

consensusID : consensus_5214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG]

[-] EMBL CD077752             [TCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG]




>consensus_5214#1
TCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAAT
ATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAG
AATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAAC
ATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATT
GAATGTGATTTACCAAAAAACCCCTCGTGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5214#0      GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCAT 60
consensus_5214#1      ------------------------------------------------------------
                                                                                  

consensus_5214#0      AACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCAC 120
consensus_5214#1      ------------------------------------------------------------
                                                                                  

consensus_5214#0      GGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATG 180
consensus_5214#1      -------------------------TCTAATAGTCTCACCGAGACAACAAAGTATCCATG 35
                                               ***********************************

consensus_5214#0      TGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTT 240
consensus_5214#1      TGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTT 95
                      ************************************************************

consensus_5214#0      AACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGA 300
consensus_5214#1      AACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGA 155
                      ************************************************************

consensus_5214#0      TTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATT 360
consensus_5214#1      TTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATT 215
                      ************************************************************

consensus_5214#0      TCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACT 420
consensus_5214#1      TCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG--- 272
                      **********************************************     ****     

consensus_5214#0      TCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC 473
consensus_5214#1      -----------------------------------------------------