cluster # 5220

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Schistosoma mansoni
cluster # 5220 cluster # 5220 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5220#0 length = 419 sequences # 2

consensus_5220#1 length = 193 sequences # 1

consensusID : consensus_5220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCC-TTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGT-TAACTTACATTTCTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATAATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGCACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATGTACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATTTACAGACCCCC]

[+] EMBL BG930232             [CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCC TTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGT TAACTTACATTTCTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATAATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGCACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATGTACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATTTACAGACCCCC]
[+] EMBL CD158338             [      AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGTCTAACTTACATTTCTAATAGTTCGAGAACTA                                                                                                                                                                                                                                         ]




>consensus_5220#0
CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTGAATAGAC
TTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAA
TCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGTTAACTTACATTTCTAATAGTTCGA
GAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATAATACTATGTAGA
CACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGCACTTTAGTTATG
CAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATGTACAGTTCGGAC
TTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATTTACAGACCCCC

consensusID : consensus_5220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTTCTAATAGTTCGAGAAACTA]

[+] EMBL CD158431             [AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTTCTAATAGTTCGAGAAACTA]




>consensus_5220#1
AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACA
GATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCCG
ATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTTCTAATA
GTTCGAGAAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5220#0      CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTT-GAATAGA 59
consensus_5220#1      ------AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGA 54
                            **** ***************************************** *******

consensus_5220#0      CTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAA 119
consensus_5220#1      CTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAA 114
                      ************************************************************

consensus_5220#0      ATCC-GATGA--GTTATCTG--TGAGACAAGA-GCTTTCAGG---TTAACTTACAT--TT 168
consensus_5220#1      ATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTT 174
                      **** ****   ********  ********** *******      ********    **

consensus_5220#0      CTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATA 228
consensus_5220#1      CTAATAGTTCGAGAAACTA----------------------------------------- 193
                      ***************   *                                         

consensus_5220#0      ATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGC 288
consensus_5220#1      ------------------------------------------------------------
                                                                                  

consensus_5220#0      ACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATG 348
consensus_5220#1      ------------------------------------------------------------
                                                                                  

consensus_5220#0      TACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATT 408
consensus_5220#1      ------------------------------------------------------------
                                                                                  

consensus_5220#0      TACAGACCCCC 419
consensus_5220#1      -----------