cluster # 5226

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Schistosoma mansoni
cluster # 5226 cluster # 5226 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5226#0 length = 551 sequences # 1

consensus_5226#1 length = 447 sequences # 2

consensusID : consensus_5226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TCATCATGNAACAACANCAGTGTGTCGGATCTATTTCTAACCTGTATTAAGCTTAATGTTCTGTTANGTTTAAGTGAATGTTTAGATAAAGATAAATCAATTCAGCTTGATTTAATACCAGAACATATTCTACTCATCTTAACACCATCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGATAAATNGCCTAATACTGATAGTAATCATAATGAAGTCATCTTGAAAGAGACTAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATAACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAATCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTTTTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT]

[+] EMBL SM7761               [TCATCATGNAACAACANCAGTGTGTCGGATCTATTTCTAACCTGTATTAAGCTTAATGTTCTGTTANGTTTAAGTGAATGTTTAGATAAAGATAAATCAATTCAGCTTGATTTAATACCAGAACATATTCTACTCATCTTAACACCATCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGATAAATNGCCTAATACTGATAGTAATCATAATGAAGTCATCTTGAAAGAGACTAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATAACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAATCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTTTTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT]




>consensus_5226#0
TCATCATGNAACAACANCAGTGTGTCGGATCTATTTCTAACCTGTATTAAGCTTAATGTT
CTGTTANGTTTAAGTGAATGTTTAGATAAAGATAAATCAATTCAGCTTGATTTAATACCA
GAACATATTCTACTCATCTTAACACCATCTAATTGTTTAACAATCTTTAAACAATATGAA
AAAGATAAATNGCCTAATACTGATAGTAATCATAATGAAGTCATCTTGAAAGAGACTAAT
CTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGATAGTATAAAT
GATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATCTAAAGAAATGATT
ATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATAACAATGTGTGGTGGCTAGGA
ATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAATCCTCCATAATTTTTCTTTT
NCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTTTTTTTCTNTTTTTGGAGGGA
GGGGGGGCCTT

consensusID : consensus_5226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 447
fasta sequence

                              [TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCAACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGATCACACAAGATGTTTAATACCTTCAAAATATTATCATCGTAATTTAAGTCAAACAGTACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAATAGATTACCAGGGAAGTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATGTAAAGAAATGATTATTTCTTTATT]

[-] EMBL CD190125             [TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCAACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGATCACACAAGATGTTTAATACCTTCAAAATATTATCATCGTAATTTAAGTCAAACAGTACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACAT                                                                                                                                                                        ]
[-] EMBL CD061214             [                                                                                                                                                                      AGTCAAACAGTACCAGCCAATGCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAATAGATTACCAGGGAAGTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCAATGTAAAGAAATGATTATTTCTTTATT]




>consensus_5226#1
TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCA
ACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGA
TCACACAAGATGTTTAATACCTTCAAAATATTATCATCGTAATTTAAGTCAAACAGTACC
AGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAGACG
ACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAATAGATTACCAGGGAAGTAA
AAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATTCAAT
GAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATTATCA
ATGTAAAGAAATGATTATTTCTTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5226#0      -----------------------------------------TCATCATGNAACAACANCA 19
consensus_5226#1      TGATTCAACCAGCGCTAAACACGAAAAACATCGTTCAAATATGATTCGTTCACACAGTCA 60
                                                               * **      ***    **

consensus_5226#0      GTGTGTCG--GATCTATT-TCTAACCTGT--------ATTAAGCTTAATGTTCTGTTANG 68
consensus_5226#1      ACGTACTGCCGATCCACAATCTAATTTATTAGAAGGCAATCAGTTAAGCACGTCTTCAGA 120
                        **   *  **** *   *****  * *        * * ** * *        * *  

consensus_5226#0      TTTAAGTGAATGTTTAGATAAAGATAAATCAAT-TCAGCTTGATTTAATACCAGAACATA 127
consensus_5226#1      TCACACAAGATGTTTA-ATACCTTCAAAATATTATCATCGTAATTTAAGTC--AAACAGT 177
                      *   *    ******* ***     ***  * * *** * * ******  *   ****  

consensus_5226#0      TTCTACTCATCTTAACACCA--TCTAATTGTTTAACAATCTTTAAACAATATGAAAAAGA 185
consensus_5226#1      ACCAGCCAATCCAGATAGTAATTCCATTTGGCCTCCAGTTCTTGTTCAGTGGCATAGAAG 237
                        *  *  ***   * *  *  ** * ***     ** *  **   ** *   * * *  

consensus_5226#0      TAAATNGCCTAATACTGATAGT------AAT--------CATAATGAAGTCATCT----- 226
consensus_5226#1      ACGACCAAATGTTGCTGCTAGTTCAGAAAATTTCCCCGACATAAT-AGATTACCAGGGAA 296
                         *     *  * *** ****      ***        ****** *  * * *      

consensus_5226#0      -TGAAAGAGACTA-----ATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATT 280
consensus_5226#1      GTAAAAGATACAATGAGAATCTACAGTGTCTATTGGACGCATTACATATTCAATCTCATT 356
                       * ***** ** *     ******************************************

consensus_5226#0      CAATGAATGATAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATT 340
consensus_5226#1      CAATGAATGGTAGTATAAATGATGTATTAAAACAATTCTATGAAATTATTCAACATAATT 416
                      ********* **************************************************

consensus_5226#0      ATCAATCTAAAGAAATGATTATTTCTTTATTAAAATCTATTGCACCANCAGGATNGGATA 400
consensus_5226#1      ATCAATGTAAAGAAATGATTATTTCTTTATT----------------------------- 447
                      ****** ************************                             

consensus_5226#0      ACAATGTGTGGTGGCTAGGAATATGTTTATTTTTACCAACCCAATNCCATGGATGGACAA 460
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      TCCTCCATAATTTTTCTTTTNCTTNNNTTTTTTCCTNCAATACATTTACCCNCCTCACTT 520
consensus_5226#1      ------------------------------------------------------------
                                                                                  

consensus_5226#0      TTTTTCTNTTTTTGGAGGGAGGGGGGGCCTT 551
consensus_5226#1      -------------------------------