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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence
[CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA]
[+] EMBL CD078758 [CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGA ]
[-] EMBL CD073218 [ TGAAAATGATAAATACANATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGT CCCGACAAGAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA]
consensusID : consensus_5295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG]
[+] EMBL CD136940 [ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5295#0 CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAAT 60
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 AAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGT 120
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 TTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAA 180
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 TGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATA 240
consensus_5295#1 ------------------------------------------------------------
consensus_5295#0 ACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTA 300
consensus_5295#1 -------------------------ATTGGAGACAACGATACTTTCTAGCATGCTGAGCA 35
* **** ***** * * ** *** **** *
consensus_5295#0 CTAATGCCTTATGGACTGAAAAAGAACAA-AGGGCTACAGTTATTATAGTCGTAGCGTTA 359
consensus_5295#1 CTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTA 95
****************** * **** *** ******** ********** ** *****
consensus_5295#0 GTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCA 419
consensus_5295#1 GAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAAC-TTGTGAGAGATTGCG 154
* **** * ********* * ** * * ** ********* *** *** ** *** *
consensus_5295#0 AATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAA 479
consensus_5295#1 A-TCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAA 213
* * * ***** **** ***** **** ** ** **** * * ***************
consensus_5295#0 ATTAACAAAGTAGAAGAGAGAGGGAATTATT-CGTGTATACTCAATGATAACCTCAGCGA 538
consensus_5295#1 GTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGA 273
****** **** ** *********** *** ** ************** **********
consensus_5295#0 ACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAA 598
consensus_5295#1 ACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGAT 333
******* **************** ********* ************************
consensus_5295#0 AGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 658
consensus_5295#1 AGTCCC-GACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 392
****** *** * ****** * ************************************
consensus_5295#0 TGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAA 718
consensus_5295#1 TGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG---------- 442
*********************** **************************
consensus_5295#0 TATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA 770
consensus_5295#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||