cluster # 5313

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Schistosoma mansoni
cluster # 5313 cluster # 5313 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5313#0 length = 745 sequences # 2

consensus_5313#1 length = 390 sequences # 1

consensusID : consensus_5313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence

                              [GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTGATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAAGTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTTTAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAA]

[+] EMBL CD078796             [GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTGATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAAGTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTTTAATGAGTCTGAAGTTTCCAATAC                                                                                                                          ]
[-] EMBL CD073257             [                                                                                                                                     TGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTATCTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTTCACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCAATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGGTTAGTATAATGATGATTGTTGTTGTCCGTATTAAATGTCGGTTAATGTTAGCTGGTTTAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAA]




>consensus_5313#0
GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTG
ATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAA
GTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTAT
CTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTT
CACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTGAGTCAAATGATAACCA
ATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGT
GCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAG
GCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGCT
CAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTA
GGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTTT
AATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGAC
TACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCT
CACAAATACTATTTTTGTTGAATAA

consensusID : consensus_5313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [GGCGTGCACCATGACCACAGTCGCATGGTTGGGCATGACAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAAAATTCTTTCAAAGTTTGTATTAAAAAAAAAAAA]

[-] EMBL AI395491             [GGCGTGCACCATGACCACAGTCGCATGGTTGGGCATGACAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACTAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAAAATTCTTTCAAAGTTTGTATTAAAAAAAAAAAA]




>consensus_5313#1
GGCGTGCACCATGACCACAGTCGCATGGTTGGGCATGACAGGCGCTGCCCTACAGCTAAC
TAATCATCATTCGAAGATTAAGCGTGCAATGTGAATCACAAGCTGTTGAATTAATCAAGT
CTGGTGTAGCATTGTCATTGGGGAGGCGTTACTGTATGTATTCGGGAACTCTCAGTACCG
CAAAAATGGTCTTTTTCCTAATGCTCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGG
TGAAAGCTGAACTGTATGTTGACTAGATTGACTACGGGATCATGGAGTTCTGTCTTTCTA
TGTGTACCTTGGTTTGCAACAAACGTAAACCTCACAAATACTATTTTTGTTGAATAAAAT
TCTTTCAAAGTTTGTATTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5313#0      GTTGGTTGCGTATTAATATAGTGATGACAATTCTCCGTTCTCAGAGCGTAATTTTTAGTG 60
consensus_5313#1      ------------------------------------------------------------
                                                                                  

consensus_5313#0      ATTGTTCACAGCACGGTTAGAACCCACCGTGTGAAAATGCGCTGCGCTGATTTAGGAGAA 120
consensus_5313#1      ------------------------------------------------------------
                                                                                  

consensus_5313#0      GTCTGAGGTTTCATGCAGTTTTTTTCGCGTATTTTTCACTTGACATGCTCAAGTCACTAT 180
consensus_5313#1      ------------------------------------------------------------
                                                                                  

consensus_5313#0      CTCTACTCTTATTTATTTTCTAGGTAAGTAGTGGAATCCGTTGGTTACGTGATGTAACTT 240
consensus_5313#1      ------------------------------------------------------------
                                                                                  

consensus_5313#0      CACAATCTGTCAATCCTATGATAACATGATTTACAATGTCTCTG-AGTCAAATGATAACC 299
consensus_5313#1      ---------------------------GGCGTGCACCATGACCACAGTCGCATGGTTGGG 33
                                                 *   * **   *  *   ****  *** *    

consensus_5313#0      AATTGTTTCTTCCTTAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCG 359
consensus_5313#1      CATGA---------CAGGCGCTGCCCTACAGCTAACTAATCATCATTCGAAGATTAAGCG 84
                       **            *********************************************

consensus_5313#0      TGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGA 419
consensus_5313#1      TGCAATGTGAATCACAAGCTGTTGAATTAATCAAGTCTGGTGTAGCATTGTCATTGGGGA 144
                      ************************************************************

consensus_5313#0      GGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCANAAATGGTCTTTTTCCTAATGC 479
consensus_5313#1      GGCGTTACTGTATGTATTCGGGAACTCTCAGTACCGCAAAAATGGTCTTTTTCCTAATGC 204
                      ************************************** *********************

consensus_5313#0      TCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACT 539
consensus_5313#1      TCAAAAATTTTTGGTTTTTAAGCCAAAGATTGCCGGTGAAAGCTGAACTGTATGTTGACT 264
                      ************************************************************

consensus_5313#0      AGGTTAGTATAATGATGATTGTTGTTGTCCGTATTANATGTCGGTTAATGTTAGCTGNTT 599
consensus_5313#1      AGATTGACTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGT--------TTG 316
                      ** **        *** ** *   *    * *  **  ***   **  *         * 

consensus_5313#0      TAATGAGTCTGAAGTTTCCAATACATATTGTCACACGATTGTTTTTCTTTTTCAGATTGA 659
consensus_5313#1      CAACAAACGTAAACCTCACAAATACTATTTTTGT-TGAATAAAATTCTTTCAAAGTTTGT 375
                       **  *   * **  *  ***    **** *     ** *    ******   ** *** 

consensus_5313#0      CTACGGGATCATGGAGTTCTGTCTTTCTATGTGTACCTTGGTTTGCAACAAACGTAAACC 719
consensus_5313#1      ATTAAAAAAAAAAAA--------------------------------------------- 390
                       *     *  *   *                                             

consensus_5313#0      TCACAAATACTATTTTTGTTGAATAA 745
consensus_5313#1      --------------------------