cluster # 5399

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Schistosoma mansoni
cluster # 5399 cluster # 5399 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5399#0 length = 886 sequences # 2

consensus_5399#1 length = 502 sequences # 1

consensusID : consensus_5399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 886
fasta sequence

                              [AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGAAGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGTAGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGTGGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACTGTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAATATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGAAACCTGTAACCTTTACATAACAAATACATCACCAATACAAGAACTGAACCTTTTATTTAGCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTGATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTTCGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAAGAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAATGTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTTTGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT]

[+] EMBL CD078979             [AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGAAGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGTAGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGTGGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACTGTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAATATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGAAACCTGTAACCTTTACATAACAAATACATCACCAATACAAGAACTGAACCTTTTATTTAGCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTGATGGT                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD073430             [                                                                                                                                                                                                                                                                                                                                                                                                        CAATACAAGAACTGAACCTTTTATTTAGGTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTTTTCAAAGTTTCAATGCACCTGAATGGGTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTTTGGGTACAGCCATTGTATTTTACAAACTGATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTTCGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAAGAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAATGTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTTTGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT]




>consensus_5399#0
AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGA
AGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGT
AGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGT
GGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACT
GTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAA
TATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGA
AACCTGTAACCTTTACATAACAAATACATCACCAATACAAGAACTGAACCTTTTATTTAG
CTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTG
GGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCCC
TCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTGA
TGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTTC
GATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAAG
AAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAATG
TACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTTT
GTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT

consensusID : consensus_5399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAAACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCAAATTTTTATGCTCATCGGACTAAATTATCTCCTATCTGTAGAAATGACTCGAAATTCCATTCGGTTCGTTGCAACCAGATACAATACTCTCCATTCTCAAAAGTTTCACACCCTCCTAACTTTTTCAAAAGTCCTATCAGCTTGACAACTTATGCAAAGTTTTCTACCCAATCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGGAAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTGGTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT]

[+] EMBL AI975262             [CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAAACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCAAATTTTTATGCTCATCGGACTAAATTATCTCCTATCTGTAGAAATGACTCGAAATTCCATTCGGTTCGTTGCAACCAGATACAATACTCTCCATTCTCAAAAGTTTCACACCCTCCTAACTTTTTCAAAAGTCCTATCAGCTTGACAACTTATGCAAAGTTTTCTACCCAATCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGGAAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTGGTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT]




>consensus_5399#1
CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAAACCTTAATCCTCGG
TTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCAAATTTTTATGCTCATCGGACTAA
ATTATCTCCTATCTGTAGAAATGACTCGAAATTCCATTCGGTTCGTTGCAACCAGATACA
ATACTCTCCATTCTCAAAAGTTTCACACCCTCCTAACTTTTTCAAAAGTCCTATCAGCTT
GACAACTTATGCAAAGTTTTCTACCCAATCGGAGAACAATAGTCCATCAAATGTGAACGA
AAACAATGAAAATGACTTGGAAAAAAGGAAATCTAGTCTAATAAAAAGATTCAAGGATGC
CTATGCAATTTACGGGAAGGTTGTTCTGGTGATCCATGGTGTGACTTCATGTTTGTGGTT
CGGACTGTTTTATTCACTGGCTTGCACTGGGATCAATTTGTTGGATATTCTTCANAGTCT
CAATGCACCTGAATGGCTAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5399#0      AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGA 60
consensus_5399#1      --------------CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAA 46
                                     ***    *  **  ***   ***  *       ** *    ** *

consensus_5399#0      AGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGT 120
consensus_5399#1      ACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCA--AATTTTT 104
                      * ** **  * *  *   * *    *    * * ***       ***  **  * **  *

consensus_5399#0      AGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGT 180
consensus_5399#1      ATGCTCATCGGACTAAATTATC-TCCTATCTGTAGAAATGACT-CGAAATTCCATTCGGT 162
                      *    * *      * ****   *   ***   *  * * ***   * **   *   ***

consensus_5399#0      GGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACT 240
consensus_5399#1      TCGT-TGCAACCAGATACAATACTC--TCCATTCTCAAAAGTTTCACACCCTCC-TAACT 218
                        *  * * *   **  * * ***   *  *****    *  *  *  ** **  *****

consensus_5399#0      GTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAA 300
consensus_5399#1      TTTT---CAAAAGTCCTATC--AGCTTGACAACTTATG-CAAAGTTTTCTAC----CCAA 268
                       ***   * *** * * **   ** ** *   ** * *  **** *  ****     ***

consensus_5399#0      TATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGA 360
consensus_5399#1      TCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGG 328
                      *   *   *   * *   *****    *    *   * *     * *  *      * * 

consensus_5399#0      AACCTGTAACCTTTACATAACAAATACATCACCAATACAAGA-ACTGAACCTTTTATTTA 419
consensus_5399#1      AAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTG 388
                      **       *   ** * *      *     ** ** ***   ** * *   **  * * 

consensus_5399#0      GCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGT 479
consensus_5399#1      GTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACT 448
                      *  *   *   **  * * **  *        *    * *    * *  * * ** ** *

consensus_5399#0      GGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCC 539
consensus_5399#1      GGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT------ 502
                      ******************************************************      

consensus_5399#0      CTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTG 599
consensus_5399#1      ------------------------------------------------------------
                                                                                  

consensus_5399#0      ATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTT 659
consensus_5399#1      ------------------------------------------------------------
                                                                                  

consensus_5399#0      CGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAA 719
consensus_5399#1      ------------------------------------------------------------
                                                                                  

consensus_5399#0      GAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAAT 779
consensus_5399#1      ------------------------------------------------------------
                                                                                  

consensus_5399#0      GTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTT 839
consensus_5399#1      ------------------------------------------------------------
                                                                                  

consensus_5399#0      TGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT 886
consensus_5399#1      -----------------------------------------------